PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002300.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 101aa    MW: 11522.2 Da    PI: 9.7534
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002300.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP83.82.2e-2643100259
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeek 59 
                  C v+gC+adls+++eyhrrh++Ce  sk+pv++v+g+++rfCqqCsr ++l efDe+k
  Pbr002300.1  43 CLVDGCRADLSRCREYHRRHRICELRSKTPVAVVKGEQKRFCQQCSRVYSLVEFDEGK 100
                  ********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.0E-2538100IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.6440100IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.14E-2441100IPR004333Transcription factor, SBP-box
PfamPF031101.5E-1843100IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MKNRPAESLG LDFKKLQEDP IKLSSSRRIN GSNNGSDHLK VLCLVDGCRA DLSRCREYHR  60
RHRICELRSK TPVAVVKGEQ KRFCQQCSRV YSLVEFDEGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A5e-184197460squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002300.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6738532e-75KF673853.1 Malus domestica cultivar Fuji SBP-box transcription factor (SPL11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344929.15e-63PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500406.15e-63PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500407.15e-63PREDICTED: squamosa promoter-binding-like protein 13A
RefseqXP_018500408.15e-63PREDICTED: squamosa promoter-binding-like protein 13A
SwissprotQ2R3Y11e-25SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19
TrEMBLA0A498HKH26e-58A0A498HKH2_MALDO; Uncharacterized protein
STRINGXP_009344927.18e-60(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-27SBP family protein