PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002342.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ARF
Protein Properties Length: 1046aa    MW: 114812 Da    PI: 6.7452
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002342.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3696.6e-22244347199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+  + +++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  Pbr002342.1 244 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQQPPA--QELIARDLHDNEWKFRHIFrgECQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 337
                  99*****************************8544444..48*****************54445566*************************..8899 PP

                  E..EEEEE-S CS
           B3  90 felvvkvfrk 99 
                   +l+++++r+
  Pbr002342.1 338 NQLLLGIRRA 347
                  999****997 PP
2Auxin_resp119.72.2e-39372455183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k
  Pbr002342.1 372 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 455
                  79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd019601.72E-3026114No hitNo description
Gene3DG3DSA:1.10.110.101.3E-2526116No hitNo description
SuperFamilySSF476997.02E-2226116IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PRINTSPR003824.3E-172743IPR000528Plant lipid transfer protein/Par allergen
SMARTSM004991.4E-928113IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PfamPF002341.8E-528111IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
PRINTSPR003824.3E-174862IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003824.3E-176984IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003824.3E-1786103IPR000528Plant lipid transfer protein/Par allergen
PROSITE patternPS00597095116IPR000528Plant lipid transfer protein/Par allergen
PRINTSPR003824.3E-17104115IPR000528Plant lipid transfer protein/Par allergen
SuperFamilySSF1019364.58E-47229375IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-40235361IPR015300DNA-binding pseudobarrel domain
CDDcd100177.61E-20243346No hitNo description
SMARTSM010193.3E-23244348IPR003340B3 DNA binding domain
PfamPF023624.1E-20244347IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407244348IPR003340B3 DNA binding domain
PfamPF065071.6E-34372455IPR010525Auxin response factor
SuperFamilySSF542771.77E-7905984No hitNo description
PfamPF023093.7E-6905992IPR033389AUX/IAA domain
PROSITE profilePS5174525.319910994IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006869Biological Processlipid transport
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MKGVVIAAVV VVLAMLVFVE PGHATVTCQQ AVSSVTPCLQ YLTSGSGTPP VACCSGVSGL  60
RQLTQTTEDR RTACQCLMDA ANQNQSIKEA AAAGLPAACR VQINFPISRS VDCNKVSLEL  120
AKVDKFLSFG GEKKCLNSEL WHACAGPLVS LPLLGSRVVY FPQGHSEQVA ASTNKEVDAH  180
FPNYPNLPPQ LICQLHNVTM HADVETDEVY AQMTLQPLNP QEQKDVYLLP AELGAASKQP  240
TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDYSQQPP AQELIARDLH DNEWKFRHIF  300
RGECQPKRHL LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRANRP QTVMPSSVLS  360
SDSMHIGLLA AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML  420
FETEESSVRR YMGTITGISD LDSVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  480
FPMYPSPFPL RLKRPWASGV PSFHGLKDGD MGINSPLMWL QGGLGDQGMQ SLNFQGFGVS  540
PWMQPRLDAS MAGLQPDVYQ AMAAAALQEM RAVDSSKCSS QSLLPFQQSS SVSNGAAAVL  600
QRQVLPQSQS QNAYLQSFQE NQAPAQAQVL QQQSQRYHPY SDQRQQQLQQ QQQQQQQHQH  660
HHQQQQQQQL NQQQQQHQLQ QSHHMQQLSV QQQIPNTMSA LPNFASITPS QSASMQSISS  720
QSQQQSFPDP VGNPIPSSDV PPIHSILGSL SQDGTSHLLH LSGSNSAISS SLLSKQTTSE  780
PQLSSGAAQC VLPQVEQLRR PQSSFSEITA LPPFPGREYS AFQGGTDPQS NLLFGVNIDS  840
SSLMLHNGIP NLRNIGNGND SVSVPFGASN YASGTGNDFP LNSDMTTSSC VDESGFLQSS  900
ENVDQVNPTG TFVKVHKLGS FGRSLDISKF SSYDDLRSEL ARMFGLEGQL EDPQRSGWQL  960
VFVDRENDVL LLGDDPWQEF VNNVYYIKIL SPLEVQQMGK EGLNSVASVP NNKLSNGSNT  1020
TVDYVSRQDL RNSRNGIASL GSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-16213047645388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002342.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376828.10.0PREDICTED: auxin response factor 6-like
RefseqXP_009376836.10.0PREDICTED: auxin response factor 6-like
RefseqXP_018507477.10.0PREDICTED: auxin response factor 6-like
SwissprotA2YG670.0ARFQ_ORYSI; Auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A498HE890.0A0A498HE89_MALDO; Multifunctional fusion protein
STRINGXP_009376828.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]