PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr002470.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HB-other

Protein Properties

Length: 206aa MW: 23725.1 Da PI: 8.9624

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr002470.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	17	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Pbr002470.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 75 5679*****************************************************97 PP
2	bZIP_1	20.9	7.6e-07	69	111	18	60
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v+ l Pbr002470.1 69 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLV 111 9**************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.159	12	76	IPR001356	Homeobox domain
SMART	SM00389	1.3E-15	14	80	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-18	15	80	IPR009057	Homeodomain-like
CDD	cd00086	6.60E-15	17	77	No hit	No description
Pfam	PF00046	9.5E-17	18	75	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-18	19	72	IPR009057	Homeodomain-like
CDD	cd14686	2.06E-5	69	108	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.0E-4	73	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MAMSCKDGNK HALDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSHIEPK 60 QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQH 120 NQGTTLATKD TSCESVVTSG QHHLTPQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW 180 VQMPGMKVFL SLYFFFEVFE TLTFQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr002470.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ177426	0.0	FJ177426.1 Malus x domestica putative HB15 HD-ZipIII mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378434.1	1e-141	PREDICTED: homeobox-leucine zipper protein ATHB-15-like, partial
Swissprot	Q9ZU11	1e-114	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A498HD71	1e-129	A0A498HD71_MALDO; Uncharacterized protein
STRING	XP_009378434.1	1e-140	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19573	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	1e-117	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]