PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr002685.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 398aa MW: 42845.4 Da PI: 9.6544

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr002685.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.5	4.2e-31	328	386	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h Pbr002685.1 328 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 386 69**********************9888**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	9.3E-19	272	325	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.3E-32	315	386	IPR003657	WRKY domain
PROSITE profile	PS50811	30.492	322	388	IPR003657	WRKY domain
SuperFamily	SSF118290	4.97E-26	325	386	IPR003657	WRKY domain
SMART	SM00774	3.0E-37	327	387	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	329	385	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MTLELMNFPK MEDQKAIQEA ASQGLQSMEH LIRFLSYQQQ QSNNQSARVD CTDITDHTVS 60 KFKKVISLLN RTGHARFRRG PVQPIQPVHF PTSDPLSSQT LNLASALNLT PTPAPAPVTV 120 PAIVPPTPIE SCFVQSQPHS MTLDFTRPNA FASNPKSAEI EFAKESFSVS SSSSFMSSAI 180 TGDGSVSNGK LGSSIFLAPA PAVSGAKPPL STAPFKKRCH EHDQSDDTSC KFSGSIPGDG 240 SVSNGKLGSS IFLAPAPAVS GAKPPLSTAP FKKRCHEHDQ SDDTSCKFSG SGSASGSGKC 300 HCSKRRKNRV KKTIRVPAIS SKIADIPADE YSWRKYGQKP IKGSPYPRGY YKCSTVRGCP 360 ARKHVERAPD DPAMLIVTYE GEHRHARENV GLVFEST*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MTLELMNFPK MEDQKAIQEA ASQGLQSMEH LIRFLSYQQQ QSNNQSARVD CTDITDHTVS  60
KFKKVISLLN RTGHARFRRG PVQPIQPVHF PTSDPLSSQT LNLASALNLT PTPAPAPVTV  120
PAIVPPTPIE SCFVQSQPHS MTLDFTRPNA FASNPKSAEI EFAKESFSVS SSSSFMSSAI  180
TGDGSVSNGK LGSSIFLAPA PAVSGAKPPL STAPFKKRCH EHDQSDDTSC KFSGSIPGDG  240
SVSNGKLGSS IFLAPAPAVS GAKPPLSTAP FKKRCHEHDQ SDDTSCKFSG SGSASGSGKC  300
HCSKRRKNRV KKTIRVPAIS SKIADIPADE YSWRKYGQKP IKGSPYPRGY YKCSTVRGCP  360
ARKHVERAPD DPAMLIVTYE GEHRHARENV GLVFEST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-21	315	385	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr002685.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ996068	0.0	KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018504520.1	0.0	PREDICTED: probable WRKY transcription factor 17
Swissprot	Q9SJA8	1e-119	WRK17_ARATH; Probable WRKY transcription factor 17
TrEMBL	A0A498HPC1	1e-180	A0A498HPC1_MALDO; Uncharacterized protein
STRING	XP_009363626.1	0.0	(Pyrus x bretschneideri)
STRING	XP_009367997.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1314	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24570.1	1e-109	WRKY DNA-binding protein 17

Publications ? help Back to Top
Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]