PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr002914.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 343aa    MW: 37292.5 Da    PI: 5.6362
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr002914.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.2e-29168228259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqKe+ +s+fprsYYrCt++   +C +kk v+r ++dp+++e+tY+geH+++
  Pbr002914.1 168 EDGFTWRKYGQKEIINSRFPRSYYRCTHQklyNCLAKKLVQRLDDDPSTFEVTYRGEHTCH 228
                  7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-27164229IPR003657WRKY domain
SuperFamilySSF1182904.84E-26165229IPR003657WRKY domain
SMARTSM007742.0E-38167229IPR003657WRKY domain
PfamPF031063.2E-26168228IPR003657WRKY domain
PROSITE profilePS5081119.807168230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDEIISLILH GCELARELGE TLPNLATQPN SLFNSLEEIT KIFGSAKEGV LRSQDSSSSS  60
YLHNTLTLEH QQIGTSVEQW LRPNPQAMDI IQTQLAADRN EAKISGGIDI RGSEAAVRGS  120
QAVDVVPASD VNIASSSSQR PRQRKDQGLI SKMTVPAPRI GNTEIPPEDG FTWRKYGQKE  180
IINSRFPRSY YRCTHQKLYN CLAKKLVQRL DDDPSTFEVT YRGEHTCHMS ATAPSILPPA  240
ADHHITQDQM AATTESPTSR WLSMDFNPIR GGSSSGGMIG GSCGGGGDDV GTSTGTRYTG  300
KEVDFPVMDL AAAMFNSGGS SGSMDFIFNS AERRWESDDK KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-21168227968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr002914.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363895.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A498JIH30.0A0A498JIH3_MALDO; Uncharacterized protein
STRINGXP_009363895.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-58WRKY DNA-binding protein 55