PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003136.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 250aa    MW: 28628 Da    PI: 8.7273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003136.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-1663108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +++eE++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
      Pbr003136.1  63 RGDMSQEEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 108
                      7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.971757IPR017877Myb-like domain
SuperFamilySSF466899.18E-2221104IPR009057Homeodomain-like
SMARTSM007170.00142159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-122464IPR009057Homeodomain-like
PROSITE profilePS5129425.93158112IPR017930Myb domain
SMARTSM007172.4E-1662110IPR001005SANT/Myb domain
PfamPF002496.5E-1563108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2365112IPR009057Homeodomain-like
CDDcd001675.32E-1266108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEMTGNKRSS SVVKAGNAQP KKNLWKPEED LILRQYVETH GLKRGGKSCR LRWKNYLRPN  60
IKRGDMSQEE QDLIIRMHKL LGNRWSLIAG RLPGRTDNEV KNYWNTHLNK NISCCPAAGS  120
KRKSTTITDY SNDGINITKK KNKIGTGKTS STATTTTDDP MITSSTDRIP KDTSSDHQHQ  180
HHKEPNIESM FTSASTEESW FYDDMDLESP RELQYYQYYL PSFSSNFNAA FAFDDEPFIG  240
YMDSFLLFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-20221127108B-MYB
1h8a_C4e-201411219128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003136.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009363992.11e-179PREDICTED: trichome differentiation protein GL1
TrEMBLA0A498KBJ71e-172A0A498KBJ7_MALDO; Uncharacterized protein
STRINGXP_009363992.11e-178(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-54myb domain protein 82