PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003219.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 342aa    MW: 36433.7 Da    PI: 7.5041
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003219.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18124173255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrd +     + +r++lg f tae Aa+a+++a+++++g
  Pbr003219.1 124 RYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGPFETAEAAAQAYDQAALRFRG 173
                  7********.**********66.....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.777124181IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-31124182IPR001471AP2/ERF domain
SMARTSM003802.0E-33124187IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-21124182IPR016177DNA-binding domain
PfamPF008474.0E-12124173IPR001471AP2/ERF domain
PRINTSPR003677.5E-14125136IPR001471AP2/ERF domain
CDDcd000186.69E-14132183No hitNo description
PRINTSPR003677.5E-14163183IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSVMVSALTH VVAGDDDEVA AAAPACGNSD SGTSSWSSVG TKRGREKEEG GSGRGGAPLS  60
ESVTRLCRAF GEFPQQIQRQ SSAFGEGSTV RIRTTEPTQT AFPPTPISAY VYSAPEIAEP  120
IRRRYRGVRQ RPWGKWAAEI RDPFKAARVW LGPFETAEAA AQAYDQAALR FRGNKAKLNF  180
PENVRLLLST AVAPPTQLTP SAPQNTLLSV ATSNESIVHS HAFHSSEXXX XXXXXXXXXX  240
XXEEMPSTSR NLVSYSMLAD MQRQPMSLYD QIVLSSSAST SAVATASSSS PSFSSPSPPP  300
FSSLSVIASA GPSIRDNSTS ASDFLMQQCS GSIQYTTPSS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22123184163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003219.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018501320.11e-161PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A498KPF81e-142A0A498KPF8_MALDO; Uncharacterized protein (Fragment)
STRINGXP_009348875.11e-150(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.15e-29ethylene response factor 110