PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003262.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 476aa MW: 54168.7 Da PI: 6.8468

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003262.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	299.7	7.4e-92	90	470	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++ Ll A+av++++ a + L++l +++s gd++qR++ayf+ +Laarl+ s y+ + ++ts +ee+ a+++++ vsP+++f+h+ta Pbr003262.1 90 LIHMLLITATAVNENNVGSALEHLTELYKIVSLCGDSVQRVVAYFADGLAARLLTRKSPFYDMIMKEPTS----EEEFVAFTALYRVSPYYQFAHFTA 183 6899*************************************************9999988887775....78899999************** PP GRAS 99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188 NqaI ea+e+e +++H+iDfd+s+G+QWp+L+q+L++++ ++ slRiTg+g+ s +el+et++rL++f + + ++ fef+ l l + Pbr003262.1 184 NQAIIEAFEKEqeknnRALHVIDFDVSYGFQWPSLIQSLSEKAssSNRISLRITGFGR----SVDELRETENRLTSFSKGFrNLVFEFQGL----LRS 273 *****9977777788*******************95444559****....9************9758***8....667 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 +l +Lr k++E++aVnlv++l +l +++++++ +L+ v l P +v++veqe + + sFl rf+e+l+y++a+fdsl+ lp es er ++E Pbr003262.1 274 SKLINLRKKRNETIAVNLVFHLNTLS-NNLKISD----LLNSVHLLDPSIVILVEQEGSKSPRSFLSRFMETLHYFAAMFDSLDDCLPLESAERLSIE 366 77789*************9997.5566655....******************************************************** PP GRAS 287 rellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdg.......yrveee.sgslv.lgWkdr 365 + lg+ei++++ +++ ++e++e+W++++e+ GF+ ++ls+k qa+lll+ + +dg ++v e+ +g + lgW+dr Pbr003262.1 367 KNHLGKEIKSMLNYDNNNdeNCPKTEKMETWKAKMESHGFEGINLSSKSKIQARLLLKirthysplE--FDGssgaaagFKVFERdDGRTIsLGWQDR 462 ********8765541277799***************************97332222211..12222233336665543555557** PP GRAS 366 pLvsvSaW 373 L+++SaW Pbr003262.1 463 YLLTISAW 470 ****** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.295	64	436	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-89	90	470	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MEDIDEEEEL LNLSLAIVTS SGRERFKKRK RSRDDGIANS ILVSPLNSYE GCEGKIFRLL 60 QMREQMLKKL DLHKKKGVAF DDEDGKGLHL IHMLLITATA VNENNVGSAL EHLTELYKIV 120 SLCGDSVQRV VAYFADGLAA RLLTRKSPFY DMIMKEPTSE EEFVAFTALY RVSPYYQFAH 180 FTANQAIIEA FEKEQEKNNR ALHVIDFDVS YGFQWPSLIQ SLSEKASSSN RISLRITGFG 240 RSVDELRETE NRLTSFSKGF RNLVFEFQGL LRSSKLINLR KKRNETIAVN LVFHLNTLSN 300 NLKISDLLNS VHLLDPSIVI LVEQEGSKSP RSFLSRFMET LHYFAAMFDS LDDCLPLESA 360 ERLSIEKNHL GKEIKSMLNY DNNNDENCPK TEKMETWKAK MESHGFEGIN LSSKSKIQAR 420 LLLKIRTHYS PLEFDGSSGA AAGFKVFERD DGRTISLGWQ DRYLLTISAW HCTVS*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MEDIDEEEEL LNLSLAIVTS SGRERFKKRK RSRDDGIANS ILVSPLNSYE GCEGKIFRLL  60
QMREQMLKKL DLHKKKGVAF DDEDGKGLHL IHMLLITATA VNENNVGSAL EHLTELYKIV  120
SLCGDSVQRV VAYFADGLAA RLLTRKSPFY DMIMKEPTSE EEFVAFTALY RVSPYYQFAH  180
FTANQAIIEA FEKEQEKNNR ALHVIDFDVS YGFQWPSLIQ SLSEKASSSN RISLRITGFG  240
RSVDELRETE NRLTSFSKGF RNLVFEFQGL LRSSKLINLR KKRNETIAVN LVFHLNTLSN  300
NLKISDLLNS VHLLDPSIVI LVEQEGSKSP RSFLSRFMET LHYFAAMFDS LDDCLPLESA  360
ERLSIEKNHL GKEIKSMLNY DNNNDENCPK TEKMETWKAK MESHGFEGIN LSSKSKIQAR  420
LLLKIRTHYS PLEFDGSSGA AAGFKVFERD DGRTISLGWQ DRYLLTISAW HCTVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-56	74	470	3	378	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	31	KKRKRS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003262.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009348843.1	0.0	PREDICTED: scarecrow-like protein 23
TrEMBL	A0A498JYY7	0.0	A0A498JYY7_MALDO; Uncharacterized protein
STRING	XP_009348843.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6200	29	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	8e-57	GRAS family protein