PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003297.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 173aa    MW: 19689.5 Da    PI: 10.4353
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003297.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.22e-17124159235
         GATA   2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  +  nC++tk+p+WR+gp g+k+LCn CG++yrk+++
  Pbr003297.1 124 TnfNCRVTKSPMWRKGPLGPKSLCNRCGIRYRKMKM 159
                  5559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.55E-13116167No hitNo description
Gene3DG3DSA:3.30.50.106.0E-13118169IPR013088Zinc finger, NHR/GATA-type
SMARTSM004013.2E-11119171IPR000679Zinc finger, GATA-type
PfamPF003201.2E-14123158IPR000679Zinc finger, GATA-type
CDDcd002024.59E-8126154No hitNo description
PROSITE profilePS5011410.501127172IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDFGGVHRSQ LMNFAPQNQF NMEGTGSGLD LTLRLGLSSN NHGGDHFRPY LNEALPRASN  60
QFWFNYTNPA VGTTSKAYNV PKPPKPDDYC DIDITNKTSR TGGSRKRNLT KVRTVKPDEN  120
LICTNFNCRV TKSPMWRKGP LGPKSLCNRC GIRYRKMKMK EEMEKKEREQ LR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003297.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349428.11e-126PREDICTED: GATA transcription factor 8-like
TrEMBLA0A498IP091e-106A0A498IP09_MALDO; Uncharacterized protein
STRINGXP_009349428.11e-125(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-12GATA transcription factor 29