PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003393.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 428aa MW: 48061.5 Da PI: 8.2158

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003393.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.8	3.3e-30	251	305	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rW+++LHe+Fve+v++LGG+ekAtPk+il++m ++gLt+ hvkSHLQkYR+ Pbr003393.1 251 KSRIRWNQDLHEKFVECVNRLGGAEKATPKAILKMMCLNGLTIFHVKSHLQKYRI 305 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-26	249	306	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-16	249	305	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	251	306	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-8	255	304	IPR001005	SANT/Myb domain
Pfam	PF14379	5.7E-19	336	381	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MNEKNIDCQE RNQQSHELIS ECSFEVGNQS YQIFGEQQQQ AWNNMGIWVQ QPTMDHGVSL 60 LQNLGPPKSP SSITSRLESP ASAFYATERC MGGFPQYDSQ VGNNPHFPSG RSYNESYSSM 120 NSSEQTDLDF DIRNTLQSIV KTQPRSYQYH KSSEKFNQIP GSDLPGCKLF AHQSNKLHGD 180 HKTTTIRRPS LSLPSKENQD QVGCYTSFNT SPVTQPSFFS QQGKQSPRYS SGNVSAAYGN 240 SPSTSPVLSS KSRIRWNQDL HEKFVECVNR LGGAEKATPK AILKMMCLNG LTIFHVKSHL 300 QKYRIAKYLP YPAEGKSEKR TTLNFEPHLV VKTGLQVKEA LQLQLDVQRR LHEQLEIQRK 360 LQLRIEEQGK QLKEMFDLQQ QASSSLLKTQ NVDVTCHEAG PSNSLDDTDQ VSTSEGSANT 420 SFHSKIS*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MNEKNIDCQE RNQQSHELIS ECSFEVGNQS YQIFGEQQQQ AWNNMGIWVQ QPTMDHGVSL  60
LQNLGPPKSP SSITSRLESP ASAFYATERC MGGFPQYDSQ VGNNPHFPSG RSYNESYSSM  120
NSSEQTDLDF DIRNTLQSIV KTQPRSYQYH KSSEKFNQIP GSDLPGCKLF AHQSNKLHGD  180
HKTTTIRRPS LSLPSKENQD QVGCYTSFNT SPVTQPSFFS QQGKQSPRYS SGNVSAAYGN  240
SPSTSPVLSS KSRIRWNQDL HEKFVECVNR LGGAEKATPK AILKMMCLNG LTIFHVKSHL  300
QKYRIAKYLP YPAEGKSEKR TTLNFEPHLV VKTGLQVKEA LQLQLDVQRR LHEQLEIQRK  360
LQLRIEEQGK QLKEMFDLQQ QASSSLLKTQ NVDVTCHEAG PSNSLDDTDQ VSTSEGSANT  420
SFHSKIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-21	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	251	308	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	251	308	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003393.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009348977.1	0.0	PREDICTED: myb family transcription factor PHL5-like isoform X1
Swissprot	Q0WVU3	5e-67	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A498I649	0.0	A0A498I649_MALDO; Uncharacterized protein
STRING	XP_009348977.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-66	G2-like family protein