PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003531.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 217aa    MW: 23942.6 Da    PI: 6.5048
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003531.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.9e-18148182135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Pbr003531.1 148 CTHCASEKTPQWRAGPMGPKTLCNACGVRYKSGRL 182
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-17142192IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.332142178IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-15144206No hitNo description
Gene3DG3DSA:3.30.50.103.2E-14146180IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.04E-14147194No hitNo description
PfamPF003203.8E-16148182IPR000679Zinc finger, GATA-type
PROSITE patternPS003440148173IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEDFFPVDDL LDLSNDALFS PSTASSTDSM DLHHHTPPPD HLHSTTTTSL FAPATTYTEF  60
TNNLCVPSDD VAELEWLSRF IDDSFTDVPA TDLAGSASFQ NEASFMFPSR VRTKLSKWAG  120
PPDPQNSPAR PNRPRREPSE ASPSPLRCTH CASEKTPQWR AGPMGPKTLC NACGVRYKSG  180
RLVPEYRPAA SPTFVLTQHS NSHRKVLELR RQKEAS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003531.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348862.21e-158PREDICTED: GATA transcription factor 4-like
SwissprotO497432e-59GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A498JI551e-144A0A498JI55_MALDO; GATA transcription factor
STRINGXP_009348862.11e-157(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF135501925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.14e-59GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]