PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003714.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 237aa    MW: 26485.5 Da    PI: 4.7863
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003714.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1861112155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +++Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  Pbr003714.1  61 PVYRGVRRRN-NNKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 112
                  68*****887.8******9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1461112IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2262122IPR016177DNA-binding domain
SMARTSM003802.1E-2862126IPR001471AP2/ERF domain
PROSITE profilePS5103222.58962120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-3162122IPR001471AP2/ERF domain
PRINTSPR003678.4E-86374IPR001471AP2/ERF domain
CDDcd000181.13E-2863122No hitNo description
PRINTSPR003678.4E-886102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNTIFSNQLS DSSEKPESSS DDTSITAQSQ LASFSDEEVI LASSRPKKRA GRRVFKETRH  60
PVYRGVRRRN NNKWVCEMRE PNKKKSRIWL GTYPTAEMAA RAHDVAALAF RGKLACLNFA  120
DSAWRLPVPA SIDSVDIRRA AAEAAETFRP AEFGGALESG DDEKESKKME EEKDCRGVEE  180
SGILFYLDEE EMFDMPRLLD SMAEGLLLSP PHSSGSYMNW DDVASNDDVS LWSFSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1449119371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003714.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8264940.0AB826494.2 Pyrus pyrifolia var. culta mRNA for putative C-repeat binding factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504640.11e-174PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ934e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLW8VA661e-173W8VA66_PYRPY; Putative C-repeat binding factor 2
STRINGXP_008364557.11e-152(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-56C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]