PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003716.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 236aa    MW: 26351.3 Da    PI: 4.8004
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003716.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-1860111155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +++Wv+e r+p   + k+ r++lg++ tae+Aa+a++ a+++++g
  Pbr003716.1  60 PVYRGVRRRN-NNKWVCEMREP---NkKKSRIWLGTYPTAEMAARAHDVAALAFRG 111
                  68*****887.8******9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1460111IPR001471AP2/ERF domain
PROSITE profilePS5103222.58961119IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2261121IPR016177DNA-binding domain
SMARTSM003807.2E-2961125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3061121IPR001471AP2/ERF domain
CDDcd000183.51E-2962121No hitNo description
PRINTSPR003678.3E-86273IPR001471AP2/ERF domain
PRINTSPR003678.3E-885101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNTIFSQISD SSEKPESSSD DTGILTRSQL ASFSDEEVIL ASSRPKKRAG RRVFKETRHP  60
VYRGVRRRNN NKWVCEMREP NKKKSRIWLG TYPTAEMAAR AHDVAALAFR GKLACLNFAD  120
SLWRLPVPAS TDSVDIRRAA AEAAETFRPE EFGGVSESGD DEKESKKMEG EKDCGGAEES  180
GILLYLDEEE MFDMPRLLDS MAEGLLLSPP HSSSGRMNWD DMESNDDVSL WSFSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1448118371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003716.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5435040.0KC543504.1 Malus x domestica CBF/DREB 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504637.11e-173PREDICTED: dehydration-responsive element-binding protein 1A-like
RefseqXP_018504639.11e-173PREDICTED: dehydration-responsive element-binding protein 1A-like
SwissprotQ9FJ931e-66DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A1W6R6W41e-156A0A1W6R6W4_9ROSA; CBF3
TrEMBLA0A498JIS61e-156A0A498JIS6_MALDO; Uncharacterized protein
STRINGXP_008364557.11e-142(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-60dehydration response element B1A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]