PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003734.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 237aa    MW: 26426.4 Da    PI: 4.8759
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003734.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35e-1561112155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+ Vr++  +++Wv+e r+p   + k++r+ lg++ tae+Aa+a++ a+++++g
  Pbr003734.1  61 PVYRRVRRRN-TNKWVCEMREP---NkKKARIGLGTYPTAEMAARAHDVAALAFRG 112
                  6799***877.9******9998...5477************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.87562120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2662122IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-1862122IPR016177DNA-binding domain
SMARTSM003809.7E-2162126IPR001471AP2/ERF domain
PfamPF008471.7E-1062112IPR001471AP2/ERF domain
CDDcd000181.19E-2463122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MNTIFSNQLS DSSEKPESSS DDTSITAQSQ LASFSDEEVI LASSRPKKRA GRRVFKETRH  60
PVYRRVRRRN TNKWVCEMRE PNKKKARIGL GTYPTAEMAA RAHDVAALAF RGKLACLNFA  120
DSAWRLPVPA SIDSVDIRRA AAEAAETFRP AEFGGALESG DDEKESKKME EEKDCRGVEE  180
SGILFYLDEE EMFDMPRLLD SMAEGLLLSP PHSSGSYMNW DDVASNDDVS LWSFSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003734.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8264940.0AB826494.2 Pyrus pyrifolia var. culta mRNA for putative C-repeat binding factor 2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018504641.11e-174PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9FJ938e-64DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLW8VA661e-169W8VA66_PYRPY; Putative C-repeat binding factor 2
STRINGXP_008364557.11e-148(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-49C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]