PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003769.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 259aa    MW: 28909.4 Da    PI: 9.3126
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003769.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.94e-09131154326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   ++Cr f+r GtC+yGd+C+F H+
  Pbr003769.1 131 VRICRSFFRWGTCSYGDKCRFRHV 154
                  799******************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-769102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-1269102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2677198IPR000571Zinc finger, CCCH-type
SMARTSM003560.0087397IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723128156IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-4128155IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-7130154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.23E-6131157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-7132154IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSTPLPTQQF FARYLESVDN GRQIKHQIPT EEKEIKAQSD IKSQAFKKPR TSEAVLNSNA  60
ASGQNKMLPS YYNTKLCRKF QMGCCSSGQR CSFAHGTSDL RTLRDAQGME TEKGNLARRT  120
WNGDHGSSNG VRICRSFFRW GTCSYGDKCR FRHVNPENIR DSSFTSISTA GGSAQFDCKK  180
SLECGSVQAN SLMTYTRGNN ASNRRMGVAT AYKHGQSTQC NLERNELEKL SRIYADWIED  240
MPLLHGSSSK VECYSSLV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003769.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362553.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
TrEMBLA0A498HJ711e-164A0A498HJ71_MALDO; Uncharacterized protein
STRINGXP_009362553.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.16e-13C3H family protein