PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003814.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 143aa    MW: 14751.4 Da    PI: 9.1058
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003814.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP79.83.9e-2580134155
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsef 55 
                  +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsr   +  f
  Pbr003814.1  80 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPTVIVAGLEQRFCQQCSRGTPIARF 134
                  6**********************************************97666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.2E-2774135IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-2478134IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.1778142IPR004333Transcription factor, SBP-box
PfamPF031101.1E-2081135IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MGSSSMTESG SSSSSSPPNS SAESLNGLKF GQTIYFEDVG FGAQHKSSSG SAAGSSSAGA  60
TPPKKQRGGG NMGQLGQPPR CQVEGCQVDL SDAKAYYSRH KVCGLHSKTP TVIVAGLEQR  120
FCQQCSRGTP IARFTVSTFK FC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-15811341164squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003814.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0774420.0KM077442.1 Pyrus x bretschneideri squamosa promoter binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392088.18e-85squamosa promoter-binding-like protein 9
TrEMBLA0A498I3G22e-83A0A498I3G2_MALDO; Uncharacterized protein
STRINGXP_008392088.13e-84(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.12e-24squamosa promoter binding protein-like 15