PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003843.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 202aa    MW: 22688.1 Da    PI: 8.2719
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003843.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000123355123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  Pbr003843.1 33 YECNFCKRGFTNAQALGGHMNIH 55
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-73060No hitNo description
Gene3DG3DSA:3.30.160.601.8E-53159IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5933360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MESSRANQEN SDQVMTSDDQ QQEGANKQAA KSYECNFCKR GFTNAQALGG HMNIHRKDKA  60
KLKQVSSSNT IETKHHHQQQ QKQNLLDIPK MPSLYSPILP TINSLQHNKP IGRDIDRNTI  120
RAPWPWFLSE ESDTTMQQLA LLSQTPSHNK DHQNPGTPQV RGDQLEKSLQ LSGSELDLEL  180
RLGPEPQNSS SSTANTTRKF F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003843.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2604290.0HQ260429.1 Malus domestica cultivar Fuji C2H2 type single zinc finger protein (SUP3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364347.11e-149PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLK9JIE81e-128K9JIE8_MALDO; C2H2 type single zinc finger protein
STRINGXP_009364347.11e-148(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-16C2H2 family protein