PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr003869.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 539aa MW: 62071.3 Da PI: 8.5469

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr003869.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.8	1.4e-112	166	534	3	372
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + L++cA+av+s+d++ a++l++++ +++sp+gd+++Rla yf++AL+arla+s + y+ l +++t+ +e l+a+++++ +P+ k+ ++ aN+ Pbr003869.1 166 TMLTQCAQAVASHDQRTASELIKKIGQHSSPNGDATERLAYYFANALEARLAGSRTPSYSPLLSTQTP---ATEILKAHQVYVTSCPFKKMLYFFANR 260 689************************************************999999999998888...89********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 I++ +e+++rvHii f+is+G+QWp+ +q L++Rp gpp+lRiT+++ p++g +e++eet rL+k+A++++vpfe+nv +a+++e++++e+L+v Pbr003869.1 261 KIMKLAENDTRVHIIHFGISYGFQWPCCIQYLSKRPVGPPNLRITAIELPQPGfrPTERVEETMCRLEKYAKRFDVPFEYNV-IAQKWETIRFEDLKV 357 ************************************************9************************9.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++ E+++Vn++ +l ++ de+v ++s+rd+vL+l+k+++P+++++ + +ns+ F++rf ea +ysalfd++ea++p e e+r + E+++ gr+i Pbr003869.1 358 DKYEMIVVNCMRRLRHIRDETVVVSSPRDTVLNLIKKINPDLFIHGVVNGTYNSPFFVTRFREAPFHYSALFDMFEATIPCEYEHRLMFEKAIYGRDI 455 ********************************************************************************************** PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372 +nv+ ceg +r+er et+++Wr r ++aGFk+vpl+++ k++k++l+ + + ++++e+ +++++gWk+r ++++Sa Pbr003869.1 456 MNVIVCEGLDRVERPETYKHWRVRYHRAGFKQVPLDQELLKKVKAMLKLMRyHNDFQIDEDGHWMLQGWKGRIVIALSA 534 ********************************************9999999********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.676	138	515	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-110	166	534	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence Send to blast
MDSNPGSDGD TIDISDCNHP VLKYISDILL EEDLEGKPCM LQDYLTLKAA EKSFYDVLNP 60 KGPPSFIQSP LPKGKKNHLR EDSDYTEEGR KNKQSAASND GPEPQEMFDE VLLCPDANHE 120 FEPCFHDQSV KTDGSGKLRS NKQPKISKTA RSKTKHKNRK VVYLCTMLTQ CAQAVASHDQ 180 RTASELIKKI GQHSSPNGDA TERLAYYFAN ALEARLAGSR TPSYSPLLST QTPATEILKA 240 HQVYVTSCPF KKMLYFFANR KIMKLAENDT RVHIIHFGIS YGFQWPCCIQ YLSKRPVGPP 300 NLRITAIELP QPGFRPTERV EETMCRLEKY AKRFDVPFEY NVIAQKWETI RFEDLKVDKY 360 EMIVVNCMRR LRHIRDETVV VSSPRDTVLN LIKKINPDLF IHGVVNGTYN SPFFVTRFRE 420 APFHYSALFD MFEATIPCEY EHRLMFEKAI YGRDIMNVIV CEGLDRVERP ETYKHWRVRY 480 HRAGFKQVPL DQELLKKVKA MLKLMRYHND FQIDEDGHWM LQGWKGRIVI ALSALKPA*

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence Send to blast

MDSNPGSDGD TIDISDCNHP VLKYISDILL EEDLEGKPCM LQDYLTLKAA EKSFYDVLNP  60
KGPPSFIQSP LPKGKKNHLR EDSDYTEEGR KNKQSAASND GPEPQEMFDE VLLCPDANHE  120
FEPCFHDQSV KTDGSGKLRS NKQPKISKTA RSKTKHKNRK VVYLCTMLTQ CAQAVASHDQ  180
RTASELIKKI GQHSSPNGDA TERLAYYFAN ALEARLAGSR TPSYSPLLST QTPATEILKA  240
HQVYVTSCPF KKMLYFFANR KIMKLAENDT RVHIIHFGIS YGFQWPCCIQ YLSKRPVGPP  300
NLRITAIELP QPGFRPTERV EETMCRLEKY AKRFDVPFEY NVIAQKWETI RFEDLKVDKY  360
EMIVVNCMRR LRHIRDETVV VSSPRDTVLN LIKKINPDLF IHGVVNGTYN SPFFVTRFRE  420
APFHYSALFD MFEATIPCEY EHRLMFEKAI YGRDIMNVIV CEGLDRVERP ETYKHWRVRY  480
HRAGFKQVPL DQELLKKVKA MLKLMRYHND FQIDEDGHWM LQGWKGRIVI ALSALKPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-46	170	537	25	380	Protein SCARECROW
5b3h_A	7e-46	170	537	24	379	Protein SCARECROW
5b3h_D	7e-46	170	537	24	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr003869.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008384946.1	0.0	scarecrow-like protein 30
Refseq	XP_008384948.1	0.0	scarecrow-like protein 30
Swissprot	Q9LTI5	1e-167	SCL11_ARATH; Scarecrow-like protein 11
TrEMBL	A0A498KAI2	0.0	A0A498KAI2_MALDO; Uncharacterized protein
TrEMBL	D9ZJB1	0.0	D9ZJB1_MALDO; SCL domain class transcription factor
STRING	XP_008359007.1	0.0	(Malus domestica)
STRING	XP_008384946.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-165	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]