PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr003876.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 678aa    MW: 74863.8 Da    PI: 8.7238
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr003876.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07579628147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Pbr003876.1 579 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 628
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.58E-7388479IPR029071Ubiquitin-related domain
CDDcd017690.00232397463No hitNo description
PROSITE profilePS5129415.731574633IPR017930Myb domain
SMARTSM007173.3E-7578631IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-10579629IPR009057Homeodomain-like
CDDcd116605.55E-17580630No hitNo description
SuperFamilySSF466891.96E-15580661IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPTP KASRSARKRR AVRKVVEDNA MGAFDLLATV AGKLLIEGES  60
SPASSHTSIG KDQCAGSKEH CLDGDKPLKV EPCDQGSCES IPLVSDHISQ DRNLSSRSKA  120
SPVHQNECHS VMTTSNCSER FVSDMLVSGK CKNEMGSLTG KLEAGYSGNR ESGDCKLDGE  180
VKILVNDETK SGEVLTGTGD DMCSLEDPVV WEGKPPPLAS SDSSTKVPMY VDHIPQRSFP  240
ASRDDVNLVS RDDDENSSGC THPSTAMKYS RPAPSRIGDR RIRKILASKY LKVAPKMKDE  300
THSNSYRDMK PNYHNRKNCY KRQRSQMNMP FKKRRLFDHS TVPNPDEGIS REGFFDLREK  360
GINASASCSR MQATGTSSSV AGQHPSFQSR NSHVKLRIKS FRIPELFIEI PETATVGSLK  420
KTVMEAVSAV LGGGLCVGVL LRGKKVRDDN KTLLQTGIPQ DDHLDSVGFS LEPNPSRNPP  480
PLCSDDSPCM LPCDELKPLI RYQPGPTSEP IHEPHMASFG IFMESDHDSA PSPTEMSAEK  540
STTDSKALVA VPDISVDALA VVPGNRKSRR FDIGQRRIRR PFSVTEVEAL VQAVEKLGTG  600
RWRDVKLRAF DSAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLTAHAYWS  660
QQQAKQQLKQ PETCVLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-555636691107Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr003876.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364379.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
TrEMBLA0A498KDB50.0A0A498KDB5_MALDO; Uncharacterized protein
STRINGXP_009364378.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-131TRF-like 2