PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr004256.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 233aa MW: 24660.3 Da PI: 8.6253

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr004256.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.7	7.5e-07	168	193	6	30
HHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 6 nerErrRRdriNsafeeLrellPk.a 30 +++Er RR +i +++ +L+el+P+ + Pbr004256.2 168 SIAERVRRTKISDRIRKLQELVPNmD 193 689********************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-6	165	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.43E-4	166	196	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.3E-6	167	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MQRAAGGSSG GEVSQGGGGL GRYSSAPATW LEALLEEDEE DPLKPTQCLT ELLAGNTPCT 60 TVDPASYDGA AGYLSRQKSS PADFNGGGGG SGAYFAGFGI PAHLDFVSSS SSLSPNSPSS 120 SANKRVREQQ QQHHFSSDTH VKMEEGGLED SVGCRVRAKR GCATHPRSIA ERVRRTKISD 180 RIRKLQELVP NMDKGSYVIK NLKHGRNFRS ISAGANAQLK NDQKVPEMPP TV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr004256.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009379414.1	1e-142	PREDICTED: transcription factor bHLH80 isoform X2
Swissprot	Q9C8P8	4e-48	BH080_ARATH; Transcription factor bHLH80
TrEMBL	A0A498J9I8	1e-114	A0A498J9I8_MALDO; Uncharacterized protein
STRING	XP_009379411.1	1e-128	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9132	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35460.1	2e-30	bHLH family protein