PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004263.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 204aa    MW: 23363.6 Da    PI: 8.3137
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004263.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF282.9e-092667344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 i+ +  r  tf +R++  + K +E+ +LC++ ++ +i+ +++
  Pbr004263.1 26 ISHEPSRRATFKNRKASFFRKLNEITTLCGVIACAVIYNPSD 67
                 677778999*********************999988887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.9E-51675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.5491666IPR002100Transcription factor, MADS-box
CDDcd002662.45E-2017100No hitNo description
SuperFamilySSF554551.96E-1618109IPR002100Transcription factor, MADS-box
PfamPF003191.2E-102667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MQLPEGTCCF FVFSTMAKNR TKRELISHEP SRRATFKNRK ASFFRKLNEI TTLCGVIACA  60
VIYNPSDTKT DVWPSPQEAF YVLEKFRNLS EERRGKFMVD QESFLKNNIS KLNRQLERAR  120
FKNQELDEKL LLIEYLEGKN FLDPGRLESL NGLDQQLDKR IDFITNRIEF LEGLRGNQVD  180
AELDSDGMAV RGIKGGVVGD NQG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004263.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021826211.11e-91agamous-like MADS-box protein AGL80
RefseqXP_021826212.11e-91agamous-like MADS-box protein AGL80
TrEMBLM5XZI51e-83M5XZI5_PRUPE; MADS-box protein 29
STRINGXP_008352802.12e-84(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.17e-28AGAMOUS-like 80