PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr004296.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 203aa MW: 23166.6 Da PI: 4.5772

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr004296.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.9	1.2e-37	8	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 lppGfrF+Ptdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+wyf+s+r+ +nr+t++gyWk+ g +++++s+ Pbr004296.1 8 LPPGFRFDPTDEELVVHFLQRKATLLPFHP-DVIPDLHLYPYDPWELNGKALSEGKQWYFYSRRA--------QNRVTSNGYWKTLGIEEPIFSSsss 96 79***********************999.99**********97777889***985........589**************9776 PP NAM 96 .kgelvglkktLvfykgrapk.gektdWvmheyrl 128 ++++vg+k+ L+fy g+ap+ g kt+W+mheyrl Pbr004296.1 97 nSTSKVGMKRYLTFYVGEAPNsGIKTNWIMHEYRL 131 66667******997765289*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-46	4	168	IPR003441	NAC domain
PROSITE profile	PS51005	45.793	8	169	IPR003441	NAC domain
Pfam	PF02365	3.0E-24	9	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MGDNQFKLPP GFRFDPTDEE LVVHFLQRKA TLLPFHPDVI PDLHLYPYDP WELNGKALSE 60 GKQWYFYSRR AQNRVTSNGY WKTLGIEEPI FSSSSSNSTS KVGMKRYLTF YVGEAPNSGI 120 KTNWIMHEYR LSSSASDCAS SSTTTRSSKR RGQPKTEYSG YVLCRVYERD EEEDDDDDGT 180 ELSCLDEVFL SLDDLDEISL PN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-38	4	170	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-38	4	170	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-38	4	170	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-38	4	170	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-38	4	170	16	169	NAC domain-containing protein 19
3swm_B	1e-38	4	170	16	169	NAC domain-containing protein 19
3swm_C	1e-38	4	170	16	169	NAC domain-containing protein 19
3swm_D	1e-38	4	170	16	169	NAC domain-containing protein 19
3swp_A	1e-38	4	170	16	169	NAC domain-containing protein 19
3swp_B	1e-38	4	170	16	169	NAC domain-containing protein 19
3swp_C	1e-38	4	170	16	169	NAC domain-containing protein 19
3swp_D	1e-38	4	170	16	169	NAC domain-containing protein 19
4dul_A	1e-38	4	170	13	166	NAC domain-containing protein 19
4dul_B	1e-38	4	170	13	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr004296.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009333614.1	1e-150	PREDICTED: NAC domain-containing protein 104-like isoform X2
Swissprot	Q8GWK6	6e-81	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	D9ZJ88	1e-118	D9ZJ88_MALDO; NAC domain class transcription factor
STRING	XP_008391397.1	1e-117	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-74	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]