PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004446.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 295aa    MW: 31571.8 Da    PI: 4.762
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004446.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019268291123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ++C+ C+ksF++   L +H +  H
  Pbr004446.2 268 HSCKTCSKSFNSDGALSSHNKAkH 291
                  79*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.637268294IPR007087Zinc finger, C2H2
PROSITE patternPS000280270291IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSVSGLRCYA INYCCTLNND SVFVGLGVEV KAGEPLKVVP AESYVIHLSQ ATLGELKKGG  60
DQCVIHVKVG DQKLVLANLS SDKMPQIPFD LVFDKEFELS HNLKSGSVHF CDFDSESEED  120
LPLNFTGNGN IVEAKPAPPK TKAVKPESSG KQKVKIEEPI KDEDDSDDSD EDDSDDDDES  180
SDEDMLGADS SDEDDEDSEK EEDTPTPKKD SKKRPNESAP KTPVSAKKAK QVTPQKTDGK  240
KGAHTATPHP VKKGGKTPQT PNSAGGDHSC KTCSKSFNSD GALSSHNKAK HGAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004446.2
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349333.11e-157PREDICTED: histone deacetylase HDT1-like
TrEMBLA0A498J4Z71e-150A0A498J4Z7_MALDO; Uncharacterized protein
STRINGXP_009349333.11e-156(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.25e-27histone deacetylase 3