PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr004632.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NF-YB

Protein Properties

Length: 240aa MW: 26529.7 Da PI: 8.3772

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr004632.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	164.3	1.6e-51	23	118	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 +eqd++lPianv+rimk++lP nakisk+aket+qec+sefisfvt+eas+kc++e+rkt+ngdd++wal+ lGf+dy pl+ yl++yre e+++ Pbr004632.1 23 KEQDQLLPIANVGRIMKQILPPNAKISKEAKETMQECASEFISFVTGEASEKCRKERRKTVNGDDVCWALGALGFDDYTGPLRRYLHRYREQERDR 118 89*******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-48	21	125	IPR009072	Histone-fold
SuperFamily	SSF47113	1.02E-37	25	139	IPR009072	Histone-fold
Pfam	PF00808	1.5E-26	28	92	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.8E-15	56	74	No hit	No description
PROSITE pattern	PS00685	0	59	75	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.8E-15	75	93	No hit	No description
PRINTS	PR00615	4.8E-15	94	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVDNNNPGAS GAAKDDDIDG GIKEQDQLLP IANVGRIMKQ ILPPNAKISK EAKETMQECA 60 SEFISFVTGE ASEKCRKERR KTVNGDDVCW ALGALGFDDY TGPLRRYLHR YREQERDRIS 120 SEANNNINED HQRISINNIP HTQGSNYFKG SSTSGSQIIH PHRCLQTSSD AVALLSFKSQ 180 ANLNNKLLYT SCPSTPSLHP PASPHLRCRR VVLPSFSLRG SFPPDTLSRL DQLRSSPPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-41	22	113	6	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr004632.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349502.1	1e-113	PREDICTED: nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A314ZLY3	2e-70	A0A314ZLY3_PRUYE; Nuclear transcription factor Y subunit B-5-like
STRING	XP_009349502.1	1e-112	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	5e-53	nuclear factor Y, subunit B5