PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004711.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 174aa    MW: 19478.2 Da    PI: 4.3119
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004711.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.33.9e-12646142
          NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv 42
                 lpp frFhP deelv +yL +k++g+++el e+i+evd+yk+
  Pbr004711.1  6 LPPRFRFHPMDEELVAYYLDRKINGRTIEL-EIIPEVDLYKF 46
                 6899**************************.99*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-11346IPR003441NAC domain
PROSITE profilePS510059.9286167IPR003441NAC domain
PfamPF023652.1E-7765IPR003441NAC domain
SuperFamilySSF512306.15E-3246162IPR011053Single hybrid motif
HamapMF_0027223.19447161IPR002930Glycine cleavage system H-protein
Gene3DG3DSA:2.40.50.1004.6E-3649163No hitNo description
PfamPF015971.4E-3150162IPR002930Glycine cleavage system H-protein
CDDcd068481.61E-3552139No hitNo description
PROSITE profilePS5096818.0266140IPR000089Biotin/lipoyl attachment
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAPMSLPPRF RFHPMDEELV AYYLDRKING RTIELEIIPE VDLYKFMESL KYARSHEWAK  60
VDEGKLATVG IADHAQELLG DIIYVKLPDT GVAVTQASSL GSVESVKAST DIKSPVSGNK  120
IEVNEELLSS PGLGWIMKVE MSSRDELDDL MDPDEYYEYV KQKIPNIPEA EIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1dxm_A9e-35471634127H PROTEIN
1dxm_B9e-35471634127H PROTEIN
1hpc_A9e-35471634127H PROTEIN OF THE GLYCINE CLEAVAGE SYSTEM
1hpc_B9e-35471634127H PROTEIN OF THE GLYCINE CLEAVAGE SYSTEM
1htp_A9e-35471634127H-PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtThe glycine decarboxylase (GDC) or glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004711.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018501476.15e-83PREDICTED: glycine cleavage system H protein 2, mitochondrial-like
SwissprotO821791e-40GCSH2_ARATH; Glycine cleavage system H protein 2, mitochondrial
TrEMBLM5X4276e-60M5X427_PRUPE; Glycine cleavage system H protein
STRINGXP_009349589.11e-120(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.15e-23NAC domain containing protein 20
Publications ? help Back to Top
  1. Douce R,Bourguignon J,Neuburger M,Rébeillé F
    The glycine decarboxylase system: a fascinating complex.
    Trends Plant Sci., 2001. 6(4): p. 167-76
    [PMID:11286922]
  2. Bauwe H,Kolukisaoglu U
    Genetic manipulation of glycine decarboxylation.
    J. Exp. Bot., 2003. 54(387): p. 1523-35
    [PMID:12730263]
  3. Ito J,Heazlewood JL,Millar AH
    Analysis of the soluble ATP-binding proteome of plant mitochondria identifies new proteins and nucleotide triphosphate interactions within the matrix.
    J. Proteome Res., 2006. 5(12): p. 3459-69
    [PMID:17137349]
  4. Deeken R, et al.
    An integrated view of gene expression and solute profiles of Arabidopsis tumors: a genome-wide approach.
    Plant Cell, 2006. 18(12): p. 3617-34
    [PMID:17172353]
  5. Lee CP,Eubel H,O'Toole N,Millar AH
    Heterogeneity of the mitochondrial proteome for photosynthetic and non-photosynthetic Arabidopsis metabolism.
    Mol. Cell Proteomics, 2008. 7(7): p. 1297-316
    [PMID:18385124]
  6. Timm S, et al.
    Mitochondrial Dihydrolipoyl Dehydrogenase Activity Shapes Photosynthesis and Photorespiration of Arabidopsis thaliana.
    Plant Cell, 2015. 27(7): p. 1968-84
    [PMID:26116608]