PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr004929.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 389aa MW: 43216.3 Da PI: 7.57

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr004929.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.2e-06	220	239	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ Pbr004929.1 220 FSCSICSKTFNRYNNLQMHM 239 89*****************9 PP
2	zf-C2H2	14.1	0.00013	305	327	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F k + ++H +++ Pbr004929.1 305 FMCKRCGKAFAVKGDWRTHEKNC 327 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.15E-6	213	242	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.9E-5	220	239	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.2E-4	220	239	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.866	220	247	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.069	220	242	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	222	242	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	266	300	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	9.28E-6	287	325	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.7E-4	291	325	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.787	305	325	IPR007087	Zinc finger, C2H2
SMART	SM00355	67	305	325	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MADPYNSPNL YNNGWINFMP LRPHHCPSLL STATSFANSS RGTPFNLNMS NPPDSYSSHN 60 LFIDYKSSNS QSQMPSSIND HINVSSPPLK EALPLLNNLL SPRGVLEEER GHEPSSGSTI 120 TPMEEETMNK YDAVYDDGDG DNGDENLTVA LHIGLPSSSN SGNVQSQFAD QDHITEGAIS 180 STISHVVSSG NPIVAVDRLN KGGHYWIPTP AQILSGPTQF SCSICSKTFN RYNNLQMHMW 240 GHGSQYRKGP DSLKRTQPTA MLRLPCYCSA PGCKHNIDNP RGAKPLKDFR TLQVHYKRKH 300 GVRSFMCKRC GKAFAVKGDW RTHEKNCGKI WYCICGSDFK HKRSLKDHIK AFGRGHGSFD 360 IKCFEEEDEP APEIEHEAEA TRWCTLQG*

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MADPYNSPNL YNNGWINFMP LRPHHCPSLL STATSFANSS RGTPFNLNMS NPPDSYSSHN  60
LFIDYKSSNS QSQMPSSIND HINVSSPPLK EALPLLNNLL SPRGVLEEER GHEPSSGSTI  120
TPMEEETMNK YDAVYDDGDG DNGDENLTVA LHIGLPSSSN SGNVQSQFAD QDHITEGAIS  180
STISHVVSSG NPIVAVDRLN KGGHYWIPTP AQILSGPTQF SCSICSKTFN RYNNLQMHMW  240
GHGSQYRKGP DSLKRTQPTA MLRLPCYCSA PGCKHNIDNP RGAKPLKDFR TLQVHYKRKH  300
GVRSFMCKRC GKAFAVKGDW RTHEKNCGKI WYCICGSDFK HKRSLKDHIK AFGRGHGSFD  360
IKCFEEEDEP APEIEHEAEA TRWCTLQG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	255	DSLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr004929.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009364992.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-109	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A498KAR9	0.0	A0A498KAR9_MALDO; Uncharacterized protein
STRING	XP_009364992.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-104	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]