PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr004975.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 746aa    MW: 81479.7 Da    PI: 10.5107
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr004975.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-1053106248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                       +W t+E++ll++avk++G ++W+t+a +++       +  t+ +ck+++++++
      Pbr004975.1  53 SSWGTWEELLLACAVKRYGVHDWDTVALELQaktslppLLTTASNCKLKYLDLR 106
                      57************************************889*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.8E-551108IPR001005SANT/Myb domain
PfamPF002494.0E-953105IPR001005SANT/Myb domain
CDDcd001676.58E-555102No hitNo description
SMARTSM002971.4E-13339448IPR001487Bromodomain
SuperFamilySSF473701.83E-16346445IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.7E-14346463IPR001487Bromodomain
CDDcd043697.01E-14346443No hitNo description
PROSITE profilePS5001411.146358429IPR001487Bromodomain
PfamPF004398.2E-10361430IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MKGGAATGGR PRFHNPQSNP INVTMKGGPA TGGSPSFNNN ITTTSDQTTT STSSWGTWEE  60
LLLACAVKRY GVHDWDTVAL ELQAKTSLPP LLTTASNCKL KYLDLRRRFR SRHQNDDVPP  120
VADDNHHDPD NNNTNNIPWL DDLRKLRVAQ LRQELHRYDV SIVSLQLKVK RLEEEREESF  180
KDDDPKPDLE DQQQQQDSNR HRSENDKTVQ GEPDGSKPDH ENQSVNGSNS TCSKNLDHDN  240
KSGPEDRALS EPGLLPAGSA EPSKRTGSGQ SDSDSDKGSS ETVAKNRKEP GRQGKGGGDS  300
ADKMRESSEA QSSVSLTKKW NGKRRRIMEV PEEQQQHNNG DVSLVKSQPL VEVLQLICAQ  360
EYGSLFERRL PAQESDKYKS IVQQHVDLET IQTKLRKDAY SSCSLSFYRD LLLLFNNAVV  420
FFPKSSLESR TAHQLRRLVL NEMKKKNLIT RPNHDPSSEP SDSVVPAPAT SQQPKRPEQL  480
ERSDSLLAKQ KSTAPIIVCR KRSSISSKPS AAASSFGQTL KGDEKKKAAA FDLKPSIKAT  540
KASSDDHAAA EKHGSSVVVK SAAAAKAKDN PVITGTRSSR RTSMSTAQHE NNKGSASKKK  600
QSASPASLKA ETPKPDKKGK TEAAGSDKKR SAAADFLKRI KRNSPADTLK SGGTGTGTSS  660
RSGGEQKRRG IGGKVDKVKE RVLRQSGDKK KQAKEESSSP SKRSVGRPPK KAAAEAAIVA  720
ASPKRPRESG GQQEASKRPK KRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322326KRRRI
2736744KRPKKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr004975.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365042.10.0PREDICTED: uncharacterized protein LOC103954913
TrEMBLA0A498KJ890.0A0A498KJ89_MALDO; Uncharacterized protein
STRINGXP_009365042.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.18e-76DNA-binding bromodomain-containing protein