PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005051.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 358aa    MW: 38617.2 Da    PI: 9.9838
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005051.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.6e-19204237134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs C ttkTplWR+gp+g+k+LCnaCG+++rk +
  Pbr005051.1 204 CSDCSTTKTPLWRSGPRGPKSLCNACGIRQRKAR 237
                  *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-18198249IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-13199237No hitNo description
Gene3DG3DSA:3.30.50.101.8E-15202237IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.413202234IPR000679Zinc finger, GATA-type
CDDcd002023.85E-12203231No hitNo description
PROSITE patternPS003440204229IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16204237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTPPPYHNLS PPSPFNLELS GDHDLQYHHF NLEPQTSFSS SLSSPLFLTP AQVQGRSDDH  60
YREPQQFQFQ LLEADHNIVP YGGSRDHDHQ AIENEGGNGT VLKLSISKNG AVGSGNPSTD  120
HEVNTSSVKW MSSKMRMMRK MSNPDHTSSS SKSSGDKPIS MKLSSHKFEE QKSQHPSSQL  180
GAEMFSCSNN SSNNMNSIPI IRVCSDCSTT KTPLWRSGPR GPKSLCNACG IRQRKARRAM  240
AAAAGAAPXX XXXXXXXAAA APAAASDTTL TVAAPSMKSS KVQHKDNKSR VSSTVPFKKR  300
PYSKLTPSPS SRGKSKKLCF EAPTAAAATT ALQRVFPQDE REAAILLMAL SCGLVHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349759.10.0PREDICTED: GATA transcription factor 21-like
TrEMBLA0A498KEN10.0A0A498KEN1_MALDO; Uncharacterized protein
STRINGXP_009349759.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-16GATA family protein