PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr005109.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 642aa MW: 70819.8 Da PI: 5.2057

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr005109.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	306.2	7.8e-94	267	640	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 +++L+++Ae +++g+ laq +Larl+++ sp g+p+ R a+yf+eAL+ l+ ++s++++al+p + + ++ a+k fse+sP++ f+++t+ Pbr005109.1 267 IDQLFNAAELIETGNSVLAQGILARLNHQLSPIGKPFSRTAFYFKEALQFLLNTnTSSNCSSALSP-----FSLIFKIGAYKSFSEISPVVHFANFTC 359 689***********************************************99333444444333.....3479******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...............skeeleetgerLakfAeelgvpfefnvl 181 NqaIleaveg +rvH+iDfdi++G+QW++++q+ a R++g psl+iT++ s++++ ++ e++ t+e+L++fA+el++ fe +++ Pbr005109.1 360 NQAILEAVEGFNRVHVIDFDIGYGGQWASFMQEVALRNGGVPSLKITAFISSSTHdefevsftrenlsthDEFEVSFTRENLEHFASELNLAFELELV 457 ********************************************999888889*******99999********************8 PP GRAS 182 vakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +le+l+ +L + E +aV + l + ++ ++++sl+ +L++vk+lsP++vv ++ +d+++ +F +++++al+ ys l++s++a Pbr005109.1 458 ---SLESLNSGSLGLPLhaSEGVAVAVNLPIGSFSNNPLSLPL----ILRFVKQLSPRIVVSLDRGSDRTDVPFPHQIIQALYSYSGLLESIDAA-NV 547 ...7888888887554444888888888888999999999999....*****************************************665.34 PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++ +k+Er ll++ i+++v+ + ++ +Wr + ++GF+p+++s+++++qa++l++++++ g+++e+++ slvl+W+ + L+s+SaWr Pbr005109.1 548 NPDALQKIERYLLQPGIEKIVTGCHLL----PKRTPSWRTLFLSSGFSPLTFSNFTESQAECLVQRTPVGGFHIEKRQSSLVLCWQCKDLISASAWR 640 668999***********988887....89999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.29	240	620	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-91	267	640	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence Send to blast
MEDWESVLSE SPGQEQSILR LIMSDIEDPS LGLNTLLQSS SGSDHLHQDL EFSGGGFQDV 60 VDQGGYGGGF EPNNNSGSLV SPSLHASSGP DFNFSNNASN VETRSSNVRP NHAIFSASMS 120 NPFLVSQSSG MFQQQQSMGL DEKPQIFNPQ MVINQNQAQF AQHPAMFMPL TYAQLQEHHL 180 LSPPPSKRLN SGELGPSYPV QRVPFSNPGQ ELVVRAQQQL QFLPQHLQQQ RPTMPVAKEK 240 MMSPAEGCKE MMNQNQLQQQ QFQQAVIDQL FNAAELIETG NSVLAQGILA RLNHQLSPIG 300 KPFSRTAFYF KEALQFLLNT NTSSNCSSAL SPFSLIFKIG AYKSFSEISP VVHFANFTCN 360 QAILEAVEGF NRVHVIDFDI GYGGQWASFM QEVALRNGGV PSLKITAFIS SSTHDEFEVS 420 FTRENLSTHD EFEVSFTREN LEHFASELNL AFELELVSLE SLNSGSLGLP LHASEGVAVA 480 VNLPIGSFSN NPLSLPLILR FVKQLSPRIV VSLDRGSDRT DVPFPHQIIQ ALYSYSGLLE 540 SIDAANVNPD ALQKIERYLL QPGIEKIVTG CHLLPKRTPS WRTLFLSSGF SPLTFSNFTE 600 SQAECLVQRT PVGGFHIEKR QSSLVLCWQC KDLISASAWR C*

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence Send to blast

MEDWESVLSE SPGQEQSILR LIMSDIEDPS LGLNTLLQSS SGSDHLHQDL EFSGGGFQDV  60
VDQGGYGGGF EPNNNSGSLV SPSLHASSGP DFNFSNNASN VETRSSNVRP NHAIFSASMS  120
NPFLVSQSSG MFQQQQSMGL DEKPQIFNPQ MVINQNQAQF AQHPAMFMPL TYAQLQEHHL  180
LSPPPSKRLN SGELGPSYPV QRVPFSNPGQ ELVVRAQQQL QFLPQHLQQQ RPTMPVAKEK  240
MMSPAEGCKE MMNQNQLQQQ QFQQAVIDQL FNAAELIETG NSVLAQGILA RLNHQLSPIG  300
KPFSRTAFYF KEALQFLLNT NTSSNCSSAL SPFSLIFKIG AYKSFSEISP VVHFANFTCN  360
QAILEAVEGF NRVHVIDFDI GYGGQWASFM QEVALRNGGV PSLKITAFIS SSTHDEFEVS  420
FTRENLSTHD EFEVSFTREN LEHFASELNL AFELELVSLE SLNSGSLGLP LHASEGVAVA  480
VNLPIGSFSN NPLSLPLILR FVKQLSPRIV VSLDRGSDRT DVPFPHQIIQ ALYSYSGLLE  540
SIDAANVNPD ALQKIERYLL QPGIEKIVTG CHLLPKRTPS WRTLFLSSGF SPLTFSNFTE  600
SQAECLVQRT PVGGFHIEKR QSSLVLCWQC KDLISASAWR C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-26	284	640	21	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr005109.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009349895.1	0.0	PREDICTED: scarecrow-like protein 6, partial
Refseq	XP_018499809.1	0.0	PREDICTED: scarecrow-like protein 6
Swissprot	O81316	1e-135	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A498KF99	0.0	A0A498KF99_MALDO; Uncharacterized protein
STRING	XP_009349895.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-126	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]