PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005306.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 403aa    MW: 46156.2 Da    PI: 8.3818
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005306.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05129151223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp Cg++F +++ L++H +  H
  Pbr005306.1 129 TCPVCGRRFYTNEKLVNHFKQiH 151
                  6*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.408128156IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4129153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280130151IPR007087Zinc finger, C2H2
CDDcd061675.36E-12145281No hitNo description
PfamPF019366.0E-7199283IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10102.6E-5219280IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVTHLKFRHI LCTVQSSRPE TLIPFTQLVR YCHFQLKTGF NSSNPSSCLA PKKISENSVA  60
IFWHLDTRPP KSVSPYKAAV KLKTAASSFG IVRHMIAYAN RNALNYVPQV VWERKERNRV  120
VIRDGESNTC PVCGRRFYTN EKLVNHFKQI HETEHVKRLN QIESARGSRR VKLVGKYSMK  180
MEKYKNAARD VLTTKVGRGL ADEVEQAGFW IRSVLDKPQG VKVALRHHIV DMMDHRRFDC  240
LMLVSDDSDF VDVVMEAKLR CLKTVVVGDF GDGALRRAAD SGFSWNEILI GKAKKEAVSV  300
VGKWKDRDVL KRLEWTYKSD EDQSLHKWND EVYGESERLE WTYKTDGNQS LHKWNDEVYG  360
ESEDDDIEGF VGEANDNLGK DDTCSWWELD SDSEAISSQS SR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005306.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349925.10.0PREDICTED: uncharacterized protein LOC103941458 isoform X1
RefseqXP_009349926.10.0PREDICTED: uncharacterized protein LOC103941458 isoform X1
RefseqXP_009349927.10.0PREDICTED: uncharacterized protein LOC103941458 isoform X1
RefseqXP_009349928.10.0PREDICTED: uncharacterized protein LOC103941458 isoform X1
TrEMBLA0A498JA840.0A0A498JA84_MALDO; Uncharacterized protein
STRINGXP_009349925.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75002533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-107C2H2 family protein