PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr005390.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 251aa MW: 27329.2 Da PI: 5.1575

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr005390.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.9	1.2e-29	51	109	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ +p+++++tY +Hnh+ Pbr005390.1 51 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLNPTMLIVTYVCDHNHP 109 69***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-31	43	111	IPR003657	WRKY domain
SuperFamily	SSF118290	1.26E-25	48	111	IPR003657	WRKY domain
SMART	SM00774	9.3E-35	50	110	IPR003657	WRKY domain
PROSITE profile	PS50811	31.364	51	111	IPR003657	WRKY domain
Pfam	PF03106	3.6E-25	52	109	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MEDSPSSASE DDTQVATPLP KKRRGVQKRV VSVPIGDVEG SKSKGEGHPP SDSWAWRKYG 60 QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRLNPTMLIV TYVCDHNHPM PTTKANQSSS 120 VTTTTTTTTA TSPTTESELP AKTEELTVFT SQVDLDLSDD SPTLLSDFGW FNDSSSTVVL 180 ESPICLGNSS CMNNDVATRL KDEDEYLFAD LGELPEGSVI FRHRNRMVES DDQNGRCSLS 240 AVVSYCSNTG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-21	28	112	6	80	Disease resistance protein RRS1
5w3x_D	2e-21	28	112	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr005390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU984033	7e-59	GU984033.1 Cucumis sativus WRKY protein (WRKY47) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009365282.1	0.0	PREDICTED: probable WRKY transcription factor 69
Swissprot	Q93WV5	1e-73	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A498J3D6	1e-170	A0A498J3D6_MALDO; Uncharacterized protein
STRING	XP_009365282.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	9e-67	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]