PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005446.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 324aa    MW: 35816.3 Da    PI: 7.1285
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005446.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-21132181255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a++kl+g
  Pbr005446.1 132 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAALKLRG 181
                  59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.65E-34131191No hitNo description
SuperFamilySSF541711.18E-23132190IPR016177DNA-binding domain
PROSITE profilePS5103223.314132189IPR001471AP2/ERF domain
SMARTSM003801.3E-38132195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32132190IPR001471AP2/ERF domain
PfamPF008471.0E-14133181IPR001471AP2/ERF domain
PRINTSPR003672.9E-11133144IPR001471AP2/ERF domain
PRINTSPR003672.9E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAKAIDLYSS STMTPDLADL LGEDQLMKAL MPFMKSASST SPSTSYSYPP QNNQNFNLYF  60
CSSPMISQAG AIGLNQLIPS QILQIQSQMI RQQHQQKQQI SAFASSAAYL KLLSTKAIPM  120
KTAGTPSKLT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL AYDKAALKLR  180
GDFARLNFPH LKQQGAHVSG AFGHYKPLHS SVDAKLQAIC QSLAANSMKQ GNTGEPCSVA  240
ETKPVVSAPS ETRMDDSFKT ELKSEWEAFS SSSSSPFWSD RSDESSTPES DITFLDFSDS  300
QWDEAENFGL EKFPSVEIDW SAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20131189160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005446.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324580.0GU732458.1 Malus x domestica AP2 domain class transcription factor (AP2D34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349966.10.0PREDICTED: ethylene-responsive transcription factor ERF060-like
TrEMBLA0A1P8VHT70.0A0A1P8VHT7_9ROSA; DREB6.5
STRINGXP_009349966.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.14e-57related to AP2 4