PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005496.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 558aa    MW: 61442.8 Da    PI: 4.5835
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005496.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.81e-301032182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...............XTTSEEEEE CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...............kekiweFkh 83 
                   Fl+k+++++ed++l+ +isw ++g sfvv+d+ ef++ +Lp+ Fkh+nf+SFvRQLn+Y  ++++++   s+                +++ weF++
   Pbr005496.1 103 FLSKTFDLVEDPSLDPIISWGSSGGSFVVWDPLEFSRLILPRNFKHNNFSSFVRQLNTYLGSSSEKNIFPSDYvlergvhllqgfrkvDPDKWEFAN 199
                   9**********************************************************8777777766644489899888877765449******* PP

                   SXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                   + F++g+++ll++i+r+ks
   Pbr005496.1 200 EAFQRGQRHLLKRIQRRKS 218
                   *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.47E-3099216IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-4899216IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-33100216IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-12103126IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-27103216IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-12141153IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-12154166IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MDPKDESHPN SPPISVGFDP ESIGLSAFRS EMPESLMGSQ LIPSSTSPLM EFEAFCSVNP  60
LGAFDFTESV SIPTSSMGGG DAEDVVAPPR PLECLQGTPV PPFLSKTFDL VEDPSLDPII  120
SWGSSGGSFV VWDPLEFSRL ILPRNFKHNN FSSFVRQLNT YLGSSSEKNI FPSDYVLERG  180
VHLLQGFRKV DPDKWEFANE AFQRGQRHLL KRIQRRKSPQ SLQIGSFIGP SAEEGKSGVE  240
GEIEMLRKER SVLMQELVEL QQQHRGTVDH MKVVNQRLQS AEKRQKQMFS FLAKMLQNPA  300
FVAQLQIKTG KEDIGPSRVR RKFVKHQQHE LGKSDADMEG QIVKYQPAWR NRTTSSTALD  360
SNPVPFEQSP DHLSQVMTGK LDLGSVSTPF QFADPALDEL AATQGFLKTP EQEGEGASSM  420
ATEDPFFKGK SVLSPQQEAN PECYVSFQED LANERTFLEL FSPGMESMIK QEDIWSMGFG  480
VSAGMSSSSH ELWGNPVNYD VPEMGVTGGL LDVWDIGPLQ EAGGSGIDKS PAHDSAFDEP  540
ESSAGQPKED ASKTTDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2010022117125Heat shock factor protein 1
5d5u_B3e-2010021626129Heat shock factor protein 1
5d5v_B3e-2010021626129Heat shock factor protein 1
5d5v_D3e-2010021626129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215LKRIQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005496.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365327.10.0PREDICTED: heat stress transcription factor A-3-like isoform X3
TrEMBLA0A498IJD10.0A0A498IJD1_MALDO; Uncharacterized protein
STRINGXP_009365327.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.12e-83heat shock transcription factor A3