PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005844.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 432aa    MW: 46317.4 Da    PI: 9.3221
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005844.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014186208223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                   C+ Cg+ F+  ++L++H+   H
  Pbr005844.1 186 ACSQCGEIFPKMESLEHHQAIrH 208
                  6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933185213IPR007087Zinc finger, C2H2
PROSITE patternPS000280185208IPR007087Zinc finger, C2H2
SuperFamilySSF563992.59E-23210428No hitNo description
Gene3DG3DSA:3.90.228.105.7E-11221427IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MALFTFAPEA TEPKKKATPP PNRRQKQPSS NNKKQQKPPP PSSFSSWDHI KNLLTCKQIE  60
GSRVHDPSKN NIVGGAAAGQ SGGYSKPGSS CSSICSFRDV VHGNTRVVHR ADNSSPESST  120
LGQETGLLSR KPATRSARSN GSGSSAAYHT SSSSRGMQFR KLSGCYECHM IVDPSRCPVP  180
RSTICACSQC GEIFPKMESL EHHQAIRHAV SELGVEDSGR NIVEIIFKSS WLKKDIPFCK  240
IERILKVQNT QRTIQRFEDC RDAVKNRALS STRKDPRCAA DGNELLRFHC ASISCTLGAR  300
GSSSLCGSVP GCGVCTVIRH GFQGKAVAEG DQGGSKGVRT TASSGRAHDS LNCTDGRRAM  360
LVCRVIAGRV RRIADGGPPE EDGLSQLSAA AGSYDSVAGF AGIYSNLEEL LVYNPRAILP  420
CFVVIYKAIE S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926PPNRRQKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005844.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335106.10.0PREDICTED: uncharacterized protein LOC103927864
TrEMBLA0A498HP360.0A0A498HP36_MALDO; Uncharacterized protein
STRINGXP_009335106.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF103413037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-164C2H2-like zinc finger protein