PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005895.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 270aa    MW: 29654.1 Da    PI: 8.5982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005895.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-184695255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  ykGVr++  +g+WvAeIr+p   + r  r +lg+++t +eAa a++aa++kl+g
  Pbr005895.1 46 TYKGVRQRT-WGKWVAEIREP---N-RgPRLWLGTYDTSYEAALAYDAAARKLYG 95
                 69****999.**********8...2.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.27E-2045105No hitNo description
Gene3DG3DSA:3.30.730.101.3E-2946105IPR001471AP2/ERF domain
PfamPF008472.5E-134695IPR001471AP2/ERF domain
PROSITE profilePS5103221.79946103IPR001471AP2/ERF domain
SMARTSM003801.0E-3446109IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2046104IPR016177DNA-binding domain
PRINTSPR003677.3E-94758IPR001471AP2/ERF domain
PRINTSPR003677.3E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSKWEMGGGS SSVGVPEKKL AKRPVQGSSR KGCMRGKGGP ENAMCTYKGV RQRTWGKWVA  60
EIREPNRGPR LWLGTYDTSY EAALAYDAAA RKLYGSKAQL NLPDQQAPKY HHHQLNQHLQ  120
HQVFPSSANP RVPPQIPNQT LVQNNPSGTG TNPACYAASV KDIAVPVIHN NFPNVKVDRP  180
HGNYNSGEAE TLEQGGMKVE KNMSSGVNNE GINGIFWGNM SDNFPVFDDW IWTEEAMSFD  240
LPVVADQGIF SRGFVDGNCW ETSHRPNGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1747103360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005895.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336842.11e-161PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A498J8W41e-121A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_008366770.11e-173(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.15e-40ERF family protein