PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005897.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 283aa    MW: 30315.8 Da    PI: 6.7848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005897.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1958107255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t +eAa a++aa++kl+g
  Pbr005897.1  58 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSYEAALAYDAAARKLYG 107
                  69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-2157117No hitNo description
SuperFamilySSF541717.19E-2158116IPR016177DNA-binding domain
SMARTSM003802.2E-3558121IPR001471AP2/ERF domain
PROSITE profilePS5103222.02358115IPR001471AP2/ERF domain
PfamPF008476.0E-1458107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3058117IPR001471AP2/ERF domain
PRINTSPR003672.0E-95970IPR001471AP2/ERF domain
PRINTSPR003672.0E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MSTMEMSGGN SSAGVAEMSG GSSSVGVAEK KLAKRPAQGS SRKGCMRGKG GPENAMCTYK  60
GVRQRTWGKW VAEIREPNRG ARLWLGTFDT SYEAALAYDA AARKLYGSEA KLNLPDQQAP  120
NYHHYQLNQH LQHQVFPSPA NPGVPPQIPN QTLVQNNPSG TGTNPACYAA PVKDIAVPVI  180
HNNFPNVKVD QPLGNYNSGG AETLPEQGGM KVENNMSSGV TNEGIDRIFW GNISESFPVF  240
DDSIWTEAAM SLDLPGVADQ GIFGCGFVDG NFWEHRTRLN GA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1859115360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005897.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336842.10.0PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A498J8W41e-125A0A498J8W4_MALDO; Uncharacterized protein
STRINGXP_009336842.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.13e-41ERF family protein