PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005909.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TALE
Protein Properties Length: 586aa    MW: 65468.9 Da    PI: 6.043
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005909.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36e-094104422254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp+ +e+  LA+++gLt +qV +WF N R +
  Pbr005909.1 410 LPYPKDSEKIMLARQTGLTRNQVANWFINARVR 442
                  79*****************************88 PP
2BELL119.31.8e-38268339172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erq+lq+kk+kLls+l+eVd+rYkqy++q+q+v+s F+ vag g+a pYt+lAl+aiSrhFr+L+dai++qi
  Pbr005909.1 268 ERQDLQNKKTKLLSMLNEVDQRYKQYYHQMQAVVSYFDKVAGNGAAGPYTALALQAISRHFRSLRDAIKGQI 339
                  799*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.4E-56189337IPR006563POX domain
PfamPF075261.9E-48195335IPR006563POX domain
PROSITE profilePS5007111.742383446IPR001356Homeobox domain
CDDcd000862.50E-11386447No hitNo description
SMARTSM003895.4E-9386450IPR001356Homeobox domain
SuperFamilySSF466895.13E-16387453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-26389450IPR009057Homeodomain-like
PfamPF059205.6E-16403442IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MATYFQNLGN QNLLNPYQGD PEPPGNMMMY LNQASYAAGS YSEVLSGGNL PPQNYPDSEG  60
VRNEMMFIPP TSDQVRDCDI GGDSLIGKHG IQDHGLSLSL STQIPQTVSL PSFQYQYPNS  120
SLSSVLSNAP VLGKGDEYNH SEEFRNFESL ASGLYGVGHE AVKTQAFYNP LCSSGSKEMR  180
SEAYLDESLG SANTMLSSKY LKAAQQLLDE VVNVRKALKQ SRFNKNQSFK RCGIDGTKET  240
DGSDQHLRRS SDPSKSSAVS SIELSPSERQ DLQNKKTKLL SMLNEVDQRY KQYYHQMQAV  300
VSYFDKVAGN GAAGPYTALA LQAISRHFRS LRDAIKGQIQ VTKKSLGEQD NSSDGQGSVI  360
PRLRYVDQQL RQQRAFQQLG GLQHAWRPQR GLPESSVTIL RAWLFEHFLL PYPKDSEKIM  420
LARQTGLTRN QVANWFINAR VRLWKPMIED IYKEEFGDLD MDSKSSPENA LKEEARVDFS  480
ASEDRKEELH ESLISATADS IEPGKLHDSK LGHNSTYDMP RLDHFTVGSD VSLALELRHG  540
EEHNAFPPST GSHVRANDAV TSLDCHYEDP EQQHLIQVWQ YPPVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-14392449158Homeobox protein Meis1
4xrs_B1e-14392449158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005909.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009335797.10.0PREDICTED: BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-118BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A498HWF90.0A0A498HWF9_MALDO; Uncharacterized protein
STRINGXP_009335797.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-109BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]