PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005945.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 91aa    MW: 9997.09 Da    PI: 6.9701
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005945.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-09750344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W+ +a+ +g g+t +++k ++
      Pbr005945.1  7 SWTPKQNKLFEKALAVYDKDtqdRWHNVAEAVG-GKTVEEVKRHY 50
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.484355IPR017884SANT domain
SMARTSM007171.3E-7456IPR001005SANT/Myb domain
SuperFamilySSF466894.41E-13662IPR009057Homeodomain-like
PfamPF002493.3E-7750IPR001005SANT/Myb domain
CDDcd001677.54E-8750No hitNo description
Gene3DG3DSA:1.10.10.602.4E-4754IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MAPVSSSWTP KQNKLFEKAL AVYDKDTQDR WHNVAEAVGG KTVEEVKRHY EILVHDLMHI  60
ESGQVPIPNY KAAGSSGSNG SNRGFGDEQR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-308831186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005945.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336185.19e-63PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A251R9E33e-46A0A251R9E3_PRUPE; Uncharacterized protein
STRINGXP_009336185.13e-62(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-37RAD-like 6