PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005954.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 89aa    MW: 9987.04 Da    PI: 6.5342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005954.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-09552247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+   +l+ +a + + ++   +W+  ar +g g++ +++k ++q++
      Pbr005954.1  5 GSWTARQNKLFENALAVYDKDtpdRWHNLARAVG-GKSVEEVKRHYQML 52
                     89********************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.552256IPR017884SANT domain
SMARTSM007173.1E-8355IPR001005SANT/Myb domain
PfamPF002497.7E-7552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-5659IPR009057Homeodomain-like
CDDcd001671.19E-6653No hitNo description
SuperFamilySSF466895.15E-13660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MESSGSWTAR QNKLFENALA VYDKDTPDRW HNLARAVGGK SVEEVKRHYQ MLVEDVSKIE  60
AGEVPLPNYR KSGGGSTKSY SRDIEEER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31374778RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005954.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336315.14e-60PREDICTED: protein RADIALIS-like 3
RefseqXP_009364794.14e-60PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A498HR468e-56A0A498HR46_MALDO; Uncharacterized protein
STRINGXP_009336315.12e-59(Pyrus x bretschneideri)
STRINGXP_009364794.12e-59(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-36RAD-like 6