PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr005990.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 226aa    MW: 26088.4 Da    PI: 9.3879
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr005990.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.34.1e-131251342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+  r+ ++ kR++g  KK +E+S+LCd+ v+ i++s+
  Pbr005990.1 12 IINDACRKASYNKRKKGFVKKMKEISILCDVPVCGILYSQ 51
                 668999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.928251IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-11261IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-19396IPR002100Transcription factor, MADS-box
CDDcd002667.23E-23386No hitNo description
PfamPF003191.1E-111251IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MAGRKKGKLA YIINDACRKA SYNKRKKGFV KKMKEISILC DVPVCGILYS QYESQPIVWP  60
NPLEVQRLIT QFRNMPEEER NKKMVNHEMF LKQRIEKEQE KLNKLKKENR EKQIRMLMNQ  120
CLAGRPLTDL NLDALNDMDC MIKGSLTEIV TQIKSRKEKE LAEMNQPQVA PPQVLAATTD  180
QNMHAAMETQ VFDQSNIYTK QTVPWFLGDV PNQQFGFADD QIPPL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr005990.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365497.11e-168PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A498IET81e-161A0A498IET8_MALDO; Uncharacterized protein
STRINGXP_009365497.11e-167(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-31AGAMOUS-like 80