PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006031.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 214aa    MW: 24156.2 Da    PI: 10.3168
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006031.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.42.6e-102861132
         GATA  1 CsnCgttk.TplWRrgp.dgnktLCnaCGlyyrk 32
                 C+ Cgt+k T +WR+++  g k LC aC + y++
  Pbr006031.1 28 CQDCGTKKsTLQWREDGpKGMKALCDACYVSYKS 61
                 **************976699999*********97 PP
2GATA25.71.6e-0868101131
         GATA   1 CsnCgttkTp...lWRrgpdgnktLCnaCGlyyr 31 
                  C+ Cg+ kT+    WR+gp g+ tLCn C ++y 
  Pbr006031.1  68 CQRCGVGKTKpwqKWREGPLGKNTLCNNCHIRYT 101
                  999***999744478*****************97 PP
3GATA39.86.1e-13109143135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cgt ++  WR gp g+ tLC  CGl+y++ +l
  Pbr006031.1 109 CQHCGTGNSLRWRAGPLGTNTLCDNCGLRYKSGRL 143
                  *******************************9986 PP
4GATA36.56.5e-12188213126
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaC 26 
                  C++C t +Tp WR+gp g ktLCnaC
  Pbr006031.1 188 CQQCETETTPKWRSGPLGLKTLCNAC 213
                  ************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00542275IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.4E-72561IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.1E-82861IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-662106No hitNo description
Gene3DG3DSA:3.30.50.109.5E-566106IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.6E-768101IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.486103139IPR000679Zinc finger, GATA-type
SMARTSM004015.6E-7103157IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-11106158No hitNo description
Gene3DG3DSA:3.30.50.101.7E-8107140IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-7108156No hitNo description
PfamPF003203.5E-11109143IPR000679Zinc finger, GATA-type
SMARTSM004010.031182213IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.198186213IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.1E-10186213IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.04E-7186213No hitNo description
PfamPF003202.5E-9188213IPR000679Zinc finger, GATA-type
PROSITE patternPS003440188213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAASWKRYLC NACAIKLKHE SEILRRKCQD CGTKKSTLQW REDGPKGMKA LCDACYVSYK  60
SDIIGRKCQR CGVGKTKPWQ KWREGPLGKN TLCNNCHIRY TAEIKRRKCQ HCGTGNSLRW  120
RAGPLGTNTL CDNCGLRYKS GRLLPEYRPA SLTSFSSKLQ PKPPRKKKKI QNIETGIDGV  180
AEIRVRKCQQ CETETTPKWR SGPLGLKTLC NAC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006031.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020523911.11e-23uncharacterized protein LOC110007401
TrEMBLA0A498HKU43e-70A0A498HKU4_MALDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2774523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-19GATA transcription factor 1