PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006051.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 286aa    MW: 32413.3 Da    PI: 6.0722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006051.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18107157155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +g+W+AeIrdp     +   r++lg+f taeeA  a+++a+ +++g
  Pbr006051.1 107 KKYRGVRRRP-WGKWAAEIRDP-----HrgVRVWLGTFETAEEAGMAYDRAAIAFKG 157
                  59********.**********6.....337**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.04E-32107164No hitNo description
PfamPF008471.3E-12108157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-30108164IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21108164IPR016177DNA-binding domain
SMARTSM003801.3E-35108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.261108165IPR001471AP2/ERF domain
PRINTSPR003674.4E-11109120IPR001471AP2/ERF domain
PRINTSPR003674.4E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDGPKQRTQS RTVTNKLVKT LTTHFRETNA GRAPKIVRIF VTDNNATDSS GDEEEPSPSR  60
KHRVLVKRVI NEVRIEDSSS QTMLLPKPKA RRCRPVEESN EVSPNGKKYR GVRRRPWGKW  120
AAEIRDPHRG VRVWLGTFET AEEAGMAYDR AAIAFKGPLA LTNFLKPPEN AIPDNSDVDC  180
NQISQSPHNS DCNHCVWSPT SVLSGRDAEI VWKPVVGVSE RQNFGAVDTD FWLKDCFEPP  240
ICFDEMRVVP ETLLKDEDFS DLSLDFRSCN WDDVEDYFQG AYELK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22106164362ATERF1
3gcc_A3e-22106164362ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006051.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350189.10.0PREDICTED: ethylene-responsive transcription factor ERF069-like
TrEMBLD5L1041e-157D5L104_MALDO; AP2 domain class transcription factor
STRINGXP_009350189.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-36cytokinin response factor 6