PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006140.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 95aa    MW: 10448.6 Da    PI: 7.8461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006140.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.4e-091357344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+ E +l+  a + + ++   +W+ +a+ +g g+t++++k ++
      Pbr006140.1 13 SWTPKENKLFEMALAVYDKDtqdRWHNVAKAVGGGKTAEEVKRHY 57
                     7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.528661IPR017877Myb-like domain
SMARTSM007171.3E-71063IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-51260IPR009057Homeodomain-like
SuperFamilySSF466894.19E-131269IPR009057Homeodomain-like
CDDcd001674.11E-71357No hitNo description
PfamPF002491.0E-71357IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASVSSSRNL NSSWTPKENK LFEMALAVYD KDTQDRWHNV AKAVGGGKTA EEVKRHYEIL  60
VHDLMHIESG QVPIPNYKSA GGSSSNRGFG DEQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-31494186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006140.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365547.19e-66PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A498J6B88e-46A0A498J6B8_MALDO; Uncharacterized protein
STRINGXP_009365547.14e-65(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-34RAD-like 6