PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006147.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 96aa    MW: 10868.2 Da    PI: 9.3979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006147.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.4e-09552247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT+   +l+ +a + + ++   +W   ar +g g++ +++k ++q++
      Pbr006147.1  5 GSWTARQNKLFENALAVYDKDtpeRWYNLARAVG-GKSVEEVKRHYQML 52
                     89********************************.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.293257IPR017884SANT domain
SMARTSM007174.3E-7355IPR001005SANT/Myb domain
PfamPF002493.7E-6552IPR001005SANT/Myb domain
CDDcd001676.47E-6653No hitNo description
Gene3DG3DSA:1.10.10.609.6E-5659IPR009057Homeodomain-like
SuperFamilySSF466899.79E-13660IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASSGSWTAR QNKLFENALA VYDKDTPERW YNLARAVGGK SVEEVKRHYQ MLVEDVNKIE  60
AGEVPLPNYR KSGGGNTKSY SMDIEEQRMK TLRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-33295693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008364991.16e-66protein RADIALIS-like 3
RefseqXP_009365559.16e-66PREDICTED: protein RADIALIS-like 3
SwissprotF4JVB84e-36RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A498J8Q62e-58A0A498J8Q6_MALDO; Uncharacterized protein
STRINGXP_009365559.12e-65(Pyrus x bretschneideri)
STRINGXP_008364991.12e-65(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-38RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]