PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006218.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 83aa    MW: 9036.09 Da    PI: 6.7929
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006218.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-1012445991
                 EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3 59 yvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                   +++GW+eF+k ngL+e D+vvF+++g++ f+
  Pbr006218.1 12 LAFEEGWEEFAKRNGLNEEDIVVFEHKGDMVFN 44
                 56899*********************9998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.53151IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-101358IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-101359IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
MSKSVGAVME KLAFEEGWEE FAKRNGLNEE DIVVFEHKGD MVFNAVAYDS GGCEKKYPPD  60
SGVAANRMAT SSKARSNKHH RG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006218.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962513.11e-38B3 domain-containing protein At3g18960-like
TrEMBLA0A498J6W44e-34A0A498J6W4_MALDO; Uncharacterized protein
STRINGXP_008357222.14e-36(Malus domestica)
STRINGXP_008377458.12e-37(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.11e-10B3 family protein