PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006411.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 532aa    MW: 59468 Da    PI: 8.015
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006411.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-05384406123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k+F++   L  H+r+H
  Pbr006411.1 384 HKCRICNKVFRTYQALGAHQRVH 406
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.38426IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.31E-6426No hitNo description
PfamPF139127.0E-8426IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-680107No hitNo description
SMARTSM003550.1285107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.74185112IPR007087Zinc finger, C2H2
PROSITE patternPS00028085107IPR007087Zinc finger, C2H2
PfamPF139123.4E-486109IPR007087Zinc finger, C2H2
SMARTSM003554.8116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
PfamPF139120.013118140IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4382407IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.18E-9383406No hitNo description
SMARTSM003550.002384406IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97384411IPR007087Zinc finger, C2H2
PfamPF139126.3E-8384408IPR007087Zinc finger, C2H2
PROSITE patternPS000280386406IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-9445472No hitNo description
Gene3DG3DSA:3.30.160.603.9E-4448476IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.14450472IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.279450477IPR007087Zinc finger, C2H2
PfamPF139121.2E-9450472IPR007087Zinc finger, C2H2
PROSITE patternPS000280452472IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MMEHVCKLCK KSFVSGRVLG GHMRCHGARK SAKTEKKIEM CRVDFEVEDD DHAGYGLRRN  60
PKRSWKFSGD SKFKASAGEE NETVCRCRVC GKGFDSMRAM FGHMRHHSGR ERKETRSCEV  120
CCKGFESLRA LATHSRCHSE RIRGADGLET VSSSKMLSVD SCQYSSETMG LIRRKRSKRL  180
RYRNTNSSCY FSSFSVNESK YVTEFGEEVV EGAICLMIIS GSGNNLGRIS SVTESSDNNS  240
LSLEVQSPSQ KNWIMGKKGG VSGCDVCDDT VKLVDCISDC KNVSDEKKVF EFSENGSWFL  300
SDEEKNVEMA DRFSRGAGYK RPRLDGQSAF GLCDTEVEMN VDIIEEVESD VAAFGSMKSG  360
LNNKPKLYAT ESEVFADSQK KREHKCRICN KVFRTYQALG AHQRVHKSTS NGSAVKNEDH  420
EDRIPIAKLE CSDNSAAEGE TERVIENKGH KCSICLKVFA TGQALGGHKR VHFGKDPERG  480
AQESRVLKQQ ISNICDAFDL SRPVENGDVE FKSWWLGNEH KQEMLMGLMP N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006411.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365959.10.0PREDICTED: zinc finger protein 43-like
TrEMBLA0A498J4T60.0A0A498J4T6_MALDO; Uncharacterized protein
STRINGXP_009365959.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-15C2H2-like zinc finger protein