PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006693.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19683 Da    PI: 9.8187
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006693.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF466.7e-151251342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i n+  r++++ kR+ng +KK +E+ +LCd+ v+ ii+s+
  Pbr006693.1 12 IMNDASRKTSYNKRKNGFIKKMHEINILCDVPVCGIIYSP 51
                 8899***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-16261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.044250IPR002100Transcription factor, MADS-box
CDDcd002669.78E-24385No hitNo description
SuperFamilySSF554553.66E-20396IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-8424IPR002100Transcription factor, MADS-box
PfamPF003195.9E-141252IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-82439IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAGRKKVKLA YIMNDASRKT SYNKRKNGFI KKMHEINILC DVPVCGIIYS PYESQPVDWP  60
NLLESQHLIT KFRSMPEAER NKKMVTHEMF LKQRIEKQQE KLNNLKKENR EKQIRMLMNQ  120
CLTGRPLTGL DLNDLNDMEC MIKECVTEIV AQIKSRKEEN LAERNQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006693.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505084.11e-121PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A498K7081e-113A0A498K708_MALDO; Uncharacterized protein
STRINGXP_008355789.11e-114(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15602811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-32AGAMOUS-like 80