PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr006745.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 304aa    MW: 33809 Da    PI: 4.7849
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr006745.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.71.1e-373993660
       zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                  +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++
  Pbr006745.1 39 PNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRR 93
                 58***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-293293IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6683993IPR003851Zinc finger, Dof-type
PfamPF027017.1E-323993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MFTDPTVKQM LQCPPSGQGQ FMMMEMKRPW NKSHIEVAPN CPRCASSNTK FCYYNNYSLS  60
QPRYFCKGCR RYWTKGGSLR NVPVGGGCRK NRRGKAARLS QTDRASLSYF QHHNSSSGTE  120
DDPSGNNQPG GTNASDIDLA VVFAKFLNHN STTPDDHYHD PNLVISSSAL NDHDGSQNSS  180
KADDLVEAVD HYLLEGHQQS QEENVQTLLG INHNDDMNIH EFELQGLLGD EDQVVQDVFW  240
SDDATTSSLP SSTASFTWQP MVHLQELDCS LPSDDDQMKI STNLCGDNWS SIDFSGFEVF  300
SQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr006745.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350443.10.0PREDICTED: dof zinc finger protein DOF1.2-like
TrEMBLA0A498K1B10.0A0A498K1B1_MALDO; Uncharacterized protein
STRINGXP_009350443.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18173394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.15e-46Dof family protein