PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr006750.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 599aa MW: 67904.7 Da PI: 10.0798

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr006750.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	4.9e-05	496	518	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp+C+ F ++nL H++ H Pbr006750.1 496 YICPKCPCEFVFSENLDAHMSEH 518 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	498	518	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MTPYHDANSK LGDFEFDTSN SFNLGSVDNV TSQQVKDLFE RKEHEQRQTM AFADDLFCEG 60 KVMPLAPPLK LPPRLGQKRY TNQSPTPSTP RSPSSGIKMR VLHRRLWNDD FDPFMVALQH 120 VREEEKRGVA ETEARDISDL NDQQNKQTGL QTPIHSPSVN SPSLLQSPTR LALPRGLEFA 180 RQVRLIGMEL DHSERRSRPK LEMEMPKNTI AQESGGPCKK QTKGQKIRRL LLSALFGKPD 240 DEDKKRKDQT SEILKKPTFL RRLSFKSGRS TSCKAKKRIS NQLTKTTLVQ FRPRLLLCMG 300 YRARERNHTV HFATTVTTSR SSGSNDRPPS EKQPMQGMSQ LTLSQFVAAS RRTQVNADRS 360 RTIHLQKNEN SLLWFMQPSF SLASEVSQYC SYDPSSHNQL RDPINLNTIE FRGNKEFART 420 PASVSYPDSN FSFFTWNEPH LYMERSNLSE LRSYKGSNPS VNLLAPQQDK KVGSNPSLPD 480 GIGTKRNLNK SKYAHYICPK CPCEFVFSEN LDAHMSEHQR IEDQTNRMRS LDSASRLIGS 540 ECPLVHSQFI WNLENLAGHK LEASYPNSET SSAEIKGSPS TKLDIKAEAI SSIIKSIK*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MTPYHDANSK LGDFEFDTSN SFNLGSVDNV TSQQVKDLFE RKEHEQRQTM AFADDLFCEG  60
KVMPLAPPLK LPPRLGQKRY TNQSPTPSTP RSPSSGIKMR VLHRRLWNDD FDPFMVALQH  120
VREEEKRGVA ETEARDISDL NDQQNKQTGL QTPIHSPSVN SPSLLQSPTR LALPRGLEFA  180
RQVRLIGMEL DHSERRSRPK LEMEMPKNTI AQESGGPCKK QTKGQKIRRL LLSALFGKPD  240
DEDKKRKDQT SEILKKPTFL RRLSFKSGRS TSCKAKKRIS NQLTKTTLVQ FRPRLLLCMG  300
YRARERNHTV HFATTVTTSR SSGSNDRPPS EKQPMQGMSQ LTLSQFVAAS RRTQVNADRS  360
RTIHLQKNEN SLLWFMQPSF SLASEVSQYC SYDPSSHNQL RDPINLNTIE FRGNKEFART  420
PASVSYPDSN FSFFTWNEPH LYMERSNLSE LRSYKGSNPS VNLLAPQQDK KVGSNPSLPD  480
GIGTKRNLNK SKYAHYICPK CPCEFVFSEN LDAHMSEHQR IEDQTNRMRS LDSASRLIGS  540
ECPLVHSQFI WNLENLAGHK LEASYPNSET SSAEIKGSPS TKLDIKAEAI SSIIKSIK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr006750.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028954596.1	1e-160	uncharacterized protein LOC114823279
TrEMBL	A0A498K6F8	0.0	A0A498K6F8_MALDO; Uncharacterized protein
STRING	XP_009350441.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11350	2	2