PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr006773.2

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WOX

Protein Properties

Length: 243aa MW: 27760.2 Da PI: 4.6982

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr006773.2	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.8	1.2e-20	108	168	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p +++++eL+++l +++e++V++WFqNrRa+ k+ Pbr006773.2 108 RQRWTPSAVQLQILEQIFEEgNGTPCKQKIKELTMELtqhgQISETNVYNWFQNRRARSKR 168 89***************99************************************97 PP
2	Wus_type_Homeobox	95.9	3.3e-31	107	170	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP++ Q++iLe+++++G tP k++i+++t+eL+++G+i+++NV++WFQNr+aR+++kq Pbr006773.2 107 SRQRWTPSAVQLQILEQIFEEGNGTPCKQKIKELTMELTQHGQISETNVYNWFQNRRARSKRKQ 170 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-17	102	174	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.738	104	169	IPR001356	Homeobox domain
SMART	SM00389	8.6E-13	106	173	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	106	172	IPR009057	Homeodomain-like
CDD	cd00086	2.96E-12	108	170	No hit	No description
Pfam	PF00046	2.1E-18	108	168	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MMGEWQQQQM IHQNLQNPEE DDGIGNGNGG LFVKVMTDEQ MEQLRQQIAV YTTICDQLVD 60 LHKQLSAQQD LTGRSAPLSL IQSQLGMRLG NFYCDPFMAS GGHKITSRQR WTPSAVQLQI 120 LEQIFEEGNG TPCKQKIKEL TMELTQHGQI SETNVYNWFQ NRRARSKRKQ SMTTQNNAES 180 EAEPEVESPR DEKTKPEDIL SFDNSALRAE NMYLQSPELG TELFSWMHCL IEIRNLECTS 240 ML*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	169	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr006773.2

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009365700.1	1e-141	PREDICTED: WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	5e-71	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A498JSL3	1e-127	A0A498JSL3_MALDO; Uncharacterized protein
STRING	XP_009365700.1	1e-140	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-63	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]